Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A24
         (946 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF292062-1|AAG39077.1|  291|Homo sapiens general transcription f...    32   3.5  
X63469-1|CAA45069.1|  291|Homo sapiens transcription factor TFII...    31   4.6  
S67861-1|AAB20414.1|  291|Homo sapiens general transcription fac...    31   4.6  
BC030572-1|AAH30572.1|  291|Homo sapiens general transcription f...    31   4.6  

>AF292062-1|AAG39077.1|  291|Homo sapiens general transcription
           factor protein.
          Length = 291

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
 Frame = +1

Query: 136 GLIAVALSSAVPKPS-TIKSKNVDAVFVEK-QKKILSFFQDVS-QLNTDDEYYKIGKDYD 306
           G++   +  A+P     +K+     +FV +  KK + FF D S Q + D+E+ K+ +   
Sbjct: 165 GILLEDIEEALPNXQKAVKAXGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVT 224

Query: 307 IEMNMDNYTXXKAVEEFLK 363
           ++ +MD     + +EE+LK
Sbjct: 225 VD-SMDE----EKIEEYLK 238


>X63469-1|CAA45069.1|  291|Homo sapiens transcription factor TFIIE
           beta protein.
          Length = 291

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
 Frame = +1

Query: 136 GLIAVALSSAVPKPS-TIKSKNVDAVFVEK-QKKILSFFQDVS-QLNTDDEYYKIGKDYD 306
           G++   +  A+P     +K+     +FV +  KK + FF D S Q + D+E+ K+ +   
Sbjct: 165 GILLEDIEEALPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVT 224

Query: 307 IEMNMDNYTXXKAVEEFLK 363
           ++ +MD     + +EE+LK
Sbjct: 225 VD-SMDE----EKIEEYLK 238


>S67861-1|AAB20414.1|  291|Homo sapiens general transcription factor
           IIE 34 kda subunit protein.
          Length = 291

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
 Frame = +1

Query: 136 GLIAVALSSAVPKPS-TIKSKNVDAVFVEK-QKKILSFFQDVS-QLNTDDEYYKIGKDYD 306
           G++   +  A+P     +K+     +FV +  KK + FF D S Q + D+E+ K+ +   
Sbjct: 165 GILLEDIEEALPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVT 224

Query: 307 IEMNMDNYTXXKAVEEFLK 363
           ++ +MD     + +EE+LK
Sbjct: 225 VD-SMDE----EKIEEYLK 238


>BC030572-1|AAH30572.1|  291|Homo sapiens general transcription
           factor IIE, polypeptide 2, beta 34kDa protein.
          Length = 291

 Score = 31.5 bits (68), Expect = 4.6
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
 Frame = +1

Query: 136 GLIAVALSSAVPKPS-TIKSKNVDAVFVEK-QKKILSFFQDVS-QLNTDDEYYKIGKDYD 306
           G++   +  A+P     +K+     +FV +  KK + FF D S Q + D+E+ K+ +   
Sbjct: 165 GILLEDIEEALPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVT 224

Query: 307 IEMNMDNYTXXKAVEEFLK 363
           ++ +MD     + +EE+LK
Sbjct: 225 VD-SMDE----EKIEEYLK 238


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,187,258
Number of Sequences: 237096
Number of extensions: 2021486
Number of successful extensions: 3308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3308
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12436574528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)