Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A24
         (946 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    33   0.36 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    33   0.36 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    31   1.1  
At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative ...    30   2.6  
At2g07280.1 68415.m00835 hypothetical protein                          29   3.4  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 621 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGTLVERFKVLS 463
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 621 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGTLVERFKVLS 463
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 340 KAVEEFLKMYRTGFMPKNLEFSVFYD 417
           KA+E F +MY+TG MP  + +S   D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264


>At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative
           (Crd1) similar to leucine-containing zipper protein
           At103 GP:6911864; contains Pfam profile PF05447: Copper
           response defect 1 (CRD1)
          Length = 409

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 25/103 (24%), Positives = 45/103 (43%)
 Frame = +1

Query: 139 LIAVALSSAVPKPSTIKSKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMN 318
           +I ++ SS+ P P+T  SK+      E Q+ +L+         TD E  +   + +I  N
Sbjct: 34  VIRMSASSSPPPPTTATSKSKKGTKKEIQESLLT----PRFYTTDFEEMEQLFNTEINKN 89

Query: 319 MDNYTXXKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIALF 447
           ++       ++EF   Y      +N EF    DK++     +F
Sbjct: 90  LNEAEFEALLQEFKTDYNQTHFVRNKEFKEAADKLQGPLRQIF 132


>At2g07280.1 68415.m00835 hypothetical protein
          Length = 401

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
 Frame = +1

Query: 265 NTDDEYYKIGKDYDIEMNM---DNYTXXKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEA 435
           NTD E  ++G D    ++    D      +V+  + +   G + + +EF    D + D  
Sbjct: 269 NTDKESEEVGLDVPTVISQPLKDKPQEFPSVDINIGLLNDGTLNREIEFPES-DLVMDPF 327

Query: 436 I--ALFHLFYYAKDFETFYKSACFARVHLNQGQ----FLYAFYIAVIQRPDC-HGFVV 588
           I    +H+  Y  + E  +K+    +VH         FL+ F I++I  P C H F +
Sbjct: 328 IFPVPYHVSQYQPNGEQVFKTPIHNQVHHTIPNTYTLFLHCFCISIINTPQCKHPFQI 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,673,622
Number of Sequences: 28952
Number of extensions: 294995
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)