Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A22
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    27   3.6  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    27   4.7  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    26   6.3  

>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 130 SKWATPLSRSSFSPSFGVWLVLFAPFSHLKDK 225
           S+W  P+++       GVW ++ AP SHL+D+
Sbjct: 47  SRWRAPVNKD-----LGVWDLVEAPGSHLRDE 73


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 82  LFENNRN*KEISKFIISKWATPLSRSSFSPSFGVWLVLFAPFSHLKDKQRDYSSGV 249
           L  ++ N  +I   IIS   +P S  S  P+FGVWL+  +  +   D  R   S V
Sbjct: 412 LIHSDGNIIQIDCQIIS--VSPHSVKSNEPAFGVWLIFDSVDNRASDFVRSMRSSV 465


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 201 PIFAPKGQTEGLFKWC 248
           P+FA KG+TE  + WC
Sbjct: 97  PVFAWKGETEEEYLWC 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,360
Number of Sequences: 5004
Number of extensions: 53021
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)