Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A20
         (1232 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     31   1.4  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              31   1.4  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   30   3.3  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  

>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 1120 PPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            PPPPL      PP  +     PPPP       P PP
Sbjct: 310  PPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPP 345


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 1120 PPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            PPPPL      PP  +     PPPP       P PP
Sbjct: 222  PPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPP 257


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +1

Query: 1096 PXXGGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            P  G G  PPPP       PP        PPPP      GP PP
Sbjct: 561  PGAGQGGGPPPP-GAGQGGPPPPGAGQEGPPPPGAGQGGGPPPP 603



 Score = 30.7 bits (66), Expect = 2.5
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +1

Query: 1108 GGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            GG  PPP     +  PP        PPPP      GP PP
Sbjct: 511  GGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPP 550


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +1

Query: 1096 PXXGGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            P    G  PPPP       PP  +     PPPP       P PP
Sbjct: 298  PPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPP 341


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = +1

Query: 1096 PXXGGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            P   GG  PPPP       PP        PPPP       P PP
Sbjct: 945  PPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPP 988


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,213
Number of Sequences: 59808
Number of extensions: 184472
Number of successful extensions: 342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3846012710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)