Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A20
         (1232 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    38   0.011
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   3.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   3.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   3.9  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    29   6.8  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    29   6.8  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical protein
            T24B8.4 protein.
          Length = 866

 Score = 38.3 bits (85), Expect = 0.011
 Identities = 17/44 (38%), Positives = 18/44 (40%)
 Frame = +1

Query: 1096 PXXGGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            P   GG  PPPP+      PP        PPPP F     P PP
Sbjct: 77   PPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120



 Score = 35.5 bits (78), Expect = 0.078
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +1

Query: 1096 PXXGGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            P  G G  PPPP       PP        PPPP  F    P PP
Sbjct: 76   PPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPP 119



 Score = 32.7 bits (71), Expect = 0.55
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +1

Query: 1096 PXXGGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPPK 1230
            P    G  PPPP  +    PP   +    PPPP       P PP+
Sbjct: 87   PPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPR 131



 Score = 28.7 bits (61), Expect = 8.9
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +1

Query: 1123 PPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            PPP+   F  PP        PPPP F     P PP
Sbjct: 66   PPPVPNGFIPPPPGPGGI-PPPPPMFAGGIPPPPP 99



 Score = 28.7 bits (61), Expect = 8.9
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +1

Query: 1096 PXXGGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            P    G  PPPP       PP   +    PPPP       P PP
Sbjct: 67   PPVPNGFIPPPP-GPGGIPPPPPMFAGGIPPPPPMMGGIPPPPP 109


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +1

Query: 1096 PXXGGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            P   GG  PPPP       PP        PPPP  F    P PP
Sbjct: 752  PPISGGPPPPPPPPGGCPPPP-------PPPPPGGFKGGPPPPP 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +1

Query: 1096 PXXGGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            P   GG  PPPP       PP        PPPP  F    P PP
Sbjct: 752  PPISGGPPPPPPPPGGCPPPP-------PPPPPGGFKGGPPPPP 788


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +1

Query: 1096 PXXGGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPP 1227
            P   GG  PPPP       PP        PPPP  F    P PP
Sbjct: 335  PPISGGPPPPPPPPGGCPPPP-------PPPPPGGFKGGPPPPP 371


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
            protein Y113G7B.23 protein.
          Length = 789

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 1105 GGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPPK 1230
            GGG  PPPP       P  Q+Y    PPP   +   G  PP+
Sbjct: 675  GGGQGPPPP-------PQGQQYYGGPPPPGQPYGPPGGYPPQ 709


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like protein
            protein.
          Length = 789

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 1105 GGGXXPPPPLXVXFXXPPHQKYXFXXPPPPFFFXXXGPXPPK 1230
            GGG  PPPP       P  Q+Y    PPP   +   G  PP+
Sbjct: 675  GGGQGPPPP-------PQGQQYYGGPPPPGQPYGPPGGYPPQ 709


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,969
Number of Sequences: 27780
Number of extensions: 175542
Number of successful extensions: 390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)