Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A19
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...   148   1e-36
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...   147   2e-36
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    29   0.80 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    29   0.80 
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.2  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   7.4  

>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score =  148 bits (358), Expect = 1e-36
 Identities = 67/110 (60%), Positives = 84/110 (76%)
 Frame = +1

Query: 160 ALQAVLKPALIHGGLVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIPL 339
           AL+ VLK AL+H GL  G+ EA+KALD+ QA LCVL E CD+ AY KLV+ALC E + PL
Sbjct: 32  ALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESETPL 91

Query: 340 VKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKE 489
           +KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL  L E
Sbjct: 92  IKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKLLE 141


>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  147 bits (356), Expect = 2e-36
 Identities = 67/108 (62%), Positives = 83/108 (76%)
 Frame = +1

Query: 160 ALQAVLKPALIHGGLVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIPL 339
           +L+ VLK AL+H GL  G+ EA+KALD+ QA LCVL E CD+ AY KLV+ALC E Q PL
Sbjct: 35  SLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPL 94

Query: 340 VKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 483
           VKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL  L
Sbjct: 95  VKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 208 HGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 369
           +GL+     ++  +A L ++A   D       + ALC +  +P   V N  +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = +1

Query: 163 LQAVLKPALIHGGLVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLV 342
           +   +K A     ++ G+ E  KA+ K +  L +LA           +  LC ++ +P +
Sbjct: 41  MMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYL 100

Query: 343 KVDNNKKLGE 372
              + + LGE
Sbjct: 101 YTVSKELLGE 110


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 471 RWSFLAEIFDDNTGAADNFPCLAIL 397
           RW +LA +F  N  A  N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 770 TCLLQLIMXTNKAIASXISQIKHFFH 693
           +CL+ L   TN  I   +   KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,494
Number of Sequences: 5004
Number of extensions: 41112
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)