Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_A19
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 131 5e-31
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 31 0.75
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 3.0
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 29 4.0
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 29 4.0
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 5.3
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 28 9.3
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 9.3
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 131 bits (317), Expect = 5e-31
Identities = 62/110 (56%), Positives = 77/110 (70%)
Frame = +1
Query: 160 ALQAVLKPALIHGGLVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIPL 339
AL+AVL+ A GL GLHE KALDK +A CVLAE CDE Y KLV+ LC EHQIPL
Sbjct: 25 ALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPL 84
Query: 340 VKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKE 489
+KV + K +GE+ GLCK DK+GKARK+VGCS V+ ++G E +L +
Sbjct: 85 IKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTD 134
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 31.5 bits (68), Expect = 0.75
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +1
Query: 202 LVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 369
L G+ + K L + + +C+LA + +C E +IP V + + ++LG
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 297 LVCSFITVLSQNT*YCLPLVKSFSGFVK 214
L+C+ I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 297 LVCSFITVLSQNT*YCLPLVKSFSGFVK 214
L+C+ I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 317 ATNIRFHLSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMCSRNYL 496
+T+ RL G V+AR+T +A G A S ++ R W C +
Sbjct: 4 STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWACEEDPQ 63
Query: 497 KS 502
KS
Sbjct: 64 KS 65
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 220 EAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 384
E KALD+ Q ++ VL + CD A K ++++ EH + N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLKQ-CDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 319 NEHQIPLVKVDNNKKLGEWAGLCK 390
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 157 VALQAVLKPALIHGGLVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIP 336
+A Q + +PA++H G A K ++ + V+ ++ E + KKLV+ L ++ Q P
Sbjct: 525 LARQYLRRPAVVHIG------SAGKPTERVEQVVYMVPE---DRKRKKLVEVLESQFQPP 575
Query: 337 LVKVDNNKK 363
++ N KK
Sbjct: 576 IIIFVNQKK 584
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 196 GGLVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKL 303
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,417,763
Number of Sequences: 27780
Number of extensions: 252493
Number of successful extensions: 601
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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