Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A19
         (822 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)           146   2e-35
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)           146   2e-35
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)           146   2e-35
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...   140   1e-33
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...   140   1e-33
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac...    30   2.1  
At1g76780.1 68414.m08935 expressed protein ; expression supporte...    30   2.1  
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    29   3.7  
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            29   3.7  

>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score =  146 bits (354), Expect = 2e-35
 Identities = 65/113 (57%), Positives = 87/113 (76%)
 Frame = +1

Query: 151 VXVALQAVLKPALIHGGLVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQ 330
           V  AL+  ++ +  +GG+V GLHE+AK ++K  A LCVLAE C++  Y KLV+ALC +H 
Sbjct: 27  VSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHS 86

Query: 331 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKE 489
           I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K+
Sbjct: 87  IKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKK 139


>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score =  146 bits (354), Expect = 2e-35
 Identities = 65/113 (57%), Positives = 87/113 (76%)
 Frame = +1

Query: 151 VXVALQAVLKPALIHGGLVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQ 330
           V  AL+  ++ +  +GG+V GLHE+AK ++K  A LCVLAE C++  Y KLV+ALC +H 
Sbjct: 27  VSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHS 86

Query: 331 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKE 489
           I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K+
Sbjct: 87  IKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKK 139


>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score =  146 bits (354), Expect = 2e-35
 Identities = 65/113 (57%), Positives = 87/113 (76%)
 Frame = +1

Query: 151 VXVALQAVLKPALIHGGLVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQ 330
           V  AL+  ++ +  +GG+V GLHE+AK ++K  A LCVLAE C++  Y KLV+ALC +H 
Sbjct: 27  VSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHS 86

Query: 331 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKE 489
           I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K+
Sbjct: 87  IKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKK 139


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score =  140 bits (338), Expect = 1e-33
 Identities = 68/138 (49%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 79  SSXXLAXVAVAVPXX-PILSGHXXXVXVALQAVLKPALIHGGLVHGLHEAAKALDKXQAV 255
           S    A V V  P   P        +  AL+  L+ A  +GG+V GLHE AK ++K  A 
Sbjct: 2   SGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQ 61

Query: 256 LCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSC 435
           L VLAE C++  Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC
Sbjct: 62  LVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSC 121

Query: 436 VVIKDFGEETPALDVLKE 489
           +V+KDFGEET AL ++ +
Sbjct: 122 LVVKDFGEETTALSIVNK 139


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score =  140 bits (338), Expect = 1e-33
 Identities = 68/138 (49%), Positives = 90/138 (65%), Gaps = 1/138 (0%)
 Frame = +1

Query: 79  SSXXLAXVAVAVPXX-PILSGHXXXVXVALQAVLKPALIHGGLVHGLHEAAKALDKXQAV 255
           S    A V V  P   P        +  AL+  L+ A  +GG+V GLHE AK ++K  A 
Sbjct: 2   SGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQ 61

Query: 256 LCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSC 435
           L VLAE C++  Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC
Sbjct: 62  LVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSC 121

Query: 436 VVIKDFGEETPALDVLKE 489
           +V+KDFGEET AL ++ +
Sbjct: 122 LVVKDFGEETTALSIVNK 139


>At5g65130.1 68418.m08193 AP2 domain-containing transcription
           factor, putative similar to AP2 domain transcription
           factor
          Length = 277

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 304 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 429
           ++++CN   +PL +++   K  E  +G  K +K+ +  +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229


>At1g76780.1 68414.m08935 expressed protein ; expression supported by
            MPSS
          Length = 1871

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = +1

Query: 172  VLKPALIHGGLVHGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVD 351
            V+K     G L +GL  + K  +   + +  L E  ++  +KK+ +        P+++  
Sbjct: 1364 VVKLVAEDGSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQ 1421

Query: 352  NNKKLGEWAGLCKIDKDGKARKIVG 426
             NKK  E     KID+ GK ++I G
Sbjct: 1422 GNKKNAEEEMQDKIDRRGKNQEIKG 1446


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 208 HGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 369
           +GL+     +++ +A L V+A   D       + ALC + ++P   V    +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 208 HGLHEAAKALDKXQAVLCVLAEXCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 369
           +GL+     +++ +A L V+A   D       + ALC + ++P   V    +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,167
Number of Sequences: 28952
Number of extensions: 229377
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)