Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_A17
(861 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62913 Cluster: 60S ribosomal protein L11; n=156; Eukar... 91 3e-17
UniRef50_A0DI11 Cluster: Chromosome undetermined scaffold_51, wh... 80 6e-14
UniRef50_P42794 Cluster: 60S ribosomal protein L11-2; n=38; Euka... 79 2e-13
UniRef50_P0C0W9 Cluster: 60S ribosomal protein L11-A; n=25; Euka... 78 3e-13
UniRef50_UPI000155375A Cluster: PREDICTED: similar to ribosomal ... 69 2e-10
UniRef50_Q9YF87 Cluster: 50S ribosomal protein L5P; n=20; Archae... 60 5e-08
UniRef50_UPI00015BB1AB Cluster: LSU ribosomal protein L5P; n=1; ... 52 1e-05
UniRef50_Q6LXE0 Cluster: 50S ribosomal protein L5P; n=7; Euryarc... 47 7e-04
UniRef50_A6PPX3 Cluster: 50S ribosomal protein L5; n=1; Victival... 46 0.001
UniRef50_Q6L1B4 Cluster: 50S ribosomal protein L5P; n=4; Thermop... 44 0.004
UniRef50_A3H987 Cluster: Ribosomal protein L5; n=1; Caldivirga m... 44 0.007
UniRef50_P38517 Cluster: 50S ribosomal protein L5; n=18; cellula... 42 0.026
UniRef50_O28367 Cluster: 50S ribosomal protein L5P; n=1; Archaeo... 41 0.046
UniRef50_O04603 Cluster: 50S ribosomal protein L5, chloroplast p... 40 0.11
UniRef50_P49547 Cluster: Chloroplast 50S ribosomal protein L5; n... 39 0.19
UniRef50_Q6A6N8 Cluster: 50S ribosomal protein L5; n=125; Bacter... 38 0.33
UniRef50_A7DSY1 Cluster: Ribosomal protein L5; n=1; Candidatus N... 37 0.57
UniRef50_Q74N79 Cluster: 50S ribosomal protein L5P; n=1; Nanoarc... 37 0.57
UniRef50_A0RVY6 Cluster: Ribosomal protein L5; n=1; Cenarchaeum ... 37 0.75
UniRef50_Q7VQD6 Cluster: 50S ribosomal protein L5; n=4; Bacteria... 37 0.75
UniRef50_A3GUR6 Cluster: 50S ribosomal protein L5; n=1; Vibrio c... 36 1.3
UniRef50_A5UL75 Cluster: Ribosomal protein L5p; n=1; Methanobrev... 36 1.7
UniRef50_Q8PV37 Cluster: 50S ribosomal protein L5P; n=6; Methano... 36 1.7
UniRef50_P14124 Cluster: 50S ribosomal protein L5P; n=5; Halobac... 36 1.7
UniRef50_A5KRR2 Cluster: 50S ribosomal protein L5; n=1; candidat... 34 4.0
UniRef50_Q46GA8 Cluster: 50S ribosomal protein L5P; n=3; Methano... 34 4.0
UniRef50_A7CZB2 Cluster: Ribosomal protein L5; n=1; Opitutaceae ... 34 5.3
UniRef50_Q11I66 Cluster: Conserved repeat domain precursor; n=1;... 33 7.0
UniRef50_Q6CKT5 Cluster: Similarity; n=1; Kluyveromyces lactis|R... 33 9.3
>UniRef50_P62913 Cluster: 60S ribosomal protein L11; n=156;
Eukaryota|Rep: 60S ribosomal protein L11 - Homo sapiens
(Human)
Length = 178
Score = 91.1 bits (216), Expect = 3e-17
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKS 351
GDRLTRAAK + LTGQ PVFS+ARYTVRSFGIRRNEKIAVHCTVRGAK+
Sbjct: 30 GDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKA 79
Score = 60.5 bits (140), Expect = 5e-08
Identities = 31/53 (58%), Positives = 33/53 (62%)
Frame = +2
Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
KAEEILE+GLK + GNF EHIDLGIKY P IGIYGLDF
Sbjct: 78 KAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDF 130
>UniRef50_A0DI11 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_51,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 197
Score = 80.2 bits (189), Expect = 6e-14
Identities = 36/51 (70%), Positives = 45/51 (88%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKSR 354
GD+LT+AAK + LTGQ+PVF +ARYTVRSFGIRRNEKI+V CT+RG ++R
Sbjct: 57 GDKLTKAAKVLEDLTGQKPVFGKARYTVRSFGIRRNEKISVFCTIRGDQAR 107
Score = 42.3 bits (95), Expect = 0.015
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGI--YGL 499
+A +IL RGL+ + + GNF EHIDLG+KY P GI YGL
Sbjct: 105 QARDILVRGLRVKEMELKKRNFSESGNFGFGIQEHIDLGLKYDPYTGIFRYGL 157
>UniRef50_P42794 Cluster: 60S ribosomal protein L11-2; n=38;
Eukaryota|Rep: 60S ribosomal protein L11-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 182
Score = 78.6 bits (185), Expect = 2e-13
Identities = 42/63 (66%), Positives = 49/63 (77%)
Frame = +1
Query: 163 QKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
QK +L SV GDRLTRA+K + L+GQ PVFS+ARYTVRSFGIRRNEKIA + TVRG
Sbjct: 17 QKLVLNISV-GESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG 75
Query: 343 AKS 351
K+
Sbjct: 76 EKA 78
Score = 48.0 bits (109), Expect = 3e-04
Identities = 25/53 (47%), Positives = 29/53 (54%)
Frame = +2
Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
KA ++LE GLK + G F EHIDLGIKY P GIYG+DF
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF 129
>UniRef50_P0C0W9 Cluster: 60S ribosomal protein L11-A; n=25;
Eukaryota|Rep: 60S ribosomal protein L11-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 174
Score = 77.8 bits (183), Expect = 3e-13
Identities = 42/73 (57%), Positives = 53/73 (72%)
Frame = +1
Query: 133 SKNVNAESSYQKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNE 312
++N + +K +L SV GDRLTRA+K + L+GQ PV S+ARYTVR+FGIRRNE
Sbjct: 5 AQNPMRDLKIEKLVLNISV-GESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNE 63
Query: 313 KIAVHCTVRGAKS 351
KIAVH TVRG K+
Sbjct: 64 KIAVHVTVRGPKA 76
Score = 59.3 bits (137), Expect = 1e-07
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = +2
Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
KAEEILERGLK + GNF EHIDLGIKY P IGI+G+DF
Sbjct: 75 KAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDF 127
>UniRef50_UPI000155375A Cluster: PREDICTED: similar to ribosomal
protein L11; n=1; Mus musculus|Rep: PREDICTED: similar
to ribosomal protein L11 - Mus musculus
Length = 279
Score = 68.5 bits (160), Expect = 2e-10
Identities = 31/36 (86%), Positives = 34/36 (94%)
Frame = +1
Query: 244 TGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKS 351
+GQ PV S+ARYTVRSFGIRRNEKIAVHCTVRGAK+
Sbjct: 98 SGQAPVESKARYTVRSFGIRRNEKIAVHCTVRGAKA 133
Score = 60.5 bits (140), Expect = 5e-08
Identities = 31/53 (58%), Positives = 33/53 (62%)
Frame = +2
Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
KAEEILE+GLK + GNF EHIDLGIKY P IGIYGLDF
Sbjct: 132 KAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDF 184
>UniRef50_Q9YF87 Cluster: 50S ribosomal protein L5P; n=20;
Archaea|Rep: 50S ribosomal protein L5P - Aeropyrum
pernix
Length = 192
Score = 60.5 bits (140), Expect = 5e-08
Identities = 27/50 (54%), Positives = 39/50 (78%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKS 351
G+RL RAA+ + LTGQ+PVF +A+ T+R+FG+R+ E IAV T+RG K+
Sbjct: 45 GERLQRAAEVLEELTGQKPVFRKAKRTIRAFGVRKGENIAVMVTLRGEKA 94
Score = 34.3 bits (75), Expect = 4.0
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDL-GIKYXPLIGIYGLD 502
KA L+R L + I + HGN EHI + G+KY P +GI G+D
Sbjct: 93 KALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMD 145
>UniRef50_UPI00015BB1AB Cluster: LSU ribosomal protein L5P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L5P - Ignicoccus hospitalis KIN4/I
Length = 198
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKS 351
G+RL +A + LTGQ+PV +A+ T+R FGIRR E IAV T+RG ++
Sbjct: 51 GERLEKAYNLLEELTGQRPVKRKAKKTIRQFGIRRGENIAVMVTLRGQRA 100
>UniRef50_Q6LXE0 Cluster: 50S ribosomal protein L5P; n=7;
Euryarchaeota|Rep: 50S ribosomal protein L5P -
Methanococcus maripaludis
Length = 181
Score = 46.8 bits (106), Expect = 7e-04
Identities = 24/50 (48%), Positives = 32/50 (64%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKS 351
GDRLT AK + LTGQ PV + A+ T +FGIR+ I + T+RG K+
Sbjct: 30 GDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKKA 79
Score = 34.7 bits (76), Expect = 3.0
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 422 GNFWLRYSEHIDL-GIKYXPLIGIYGLD 502
GNF EHID G KY P +GIYG+D
Sbjct: 106 GNFSFGVPEHIDFPGQKYDPSVGIYGMD 133
>UniRef50_A6PPX3 Cluster: 50S ribosomal protein L5; n=1; Victivallis
vadensis ATCC BAA-548|Rep: 50S ribosomal protein L5 -
Victivallis vadensis ATCC BAA-548
Length = 178
Score = 46.0 bits (104), Expect = 0.001
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 136 KNVNAESSYQKALL*TSVLVNPG-DRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNE 312
KNV +K ++ T + + D T A K +GA+TGQ+PV ++AR V +F +R
Sbjct: 23 KNVMQIPKLEKIVISTGIGSDAERDAFTEAKKHIGAMTGQEPVITKARKNVSNFKLRVGM 82
Query: 313 KIAVHCTVRGAK 348
+ V T+RG++
Sbjct: 83 PVGVMVTLRGSR 94
>UniRef50_Q6L1B4 Cluster: 50S ribosomal protein L5P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L5P -
Picrophilus torridus
Length = 176
Score = 44.4 bits (100), Expect = 0.004
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVR 339
G+RL RAAK + LT +P F+ A+ TVR F IR+ I V T+R
Sbjct: 27 GERLNRAAKVLELLTHHKPAFTSAKRTVRDFNIRKGLNIGVKVTLR 72
>UniRef50_A3H987 Cluster: Ribosomal protein L5; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L5 -
Caldivirga maquilingensis IC-167
Length = 197
Score = 43.6 bits (98), Expect = 0.007
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVR 339
G+RL +AAK + LTG+ P + A +++ FGIRR E I + T+R
Sbjct: 50 GERLEKAAKVMSELTGRTPSYRLAHKSIKDFGIRRGEPIGLLVTLR 95
>UniRef50_P38517 Cluster: 50S ribosomal protein L5; n=18; cellular
organisms|Rep: 50S ribosomal protein L5 - Thermotoga
maritima
Length = 184
Score = 41.5 bits (93), Expect = 0.026
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +1
Query: 205 DRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAK 348
D + R A + +TGQ+P+ +RAR ++ +F IR+ I + T+RGA+
Sbjct: 52 DLIERHANELAKITGQKPIVTRARKSISNFKIRKGMPIGLKVTLRGAR 99
>UniRef50_O28367 Cluster: 50S ribosomal protein L5P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L5P -
Archaeoglobus fulgidus
Length = 178
Score = 40.7 bits (91), Expect = 0.046
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKS 351
G+R +A + L Q+P + A+ T+++FGIR+ E I + T+RG K+
Sbjct: 34 GERHKKAYSLLEELVEQKPAITYAKMTIKNFGIRKGEAIGIKVTLRGEKA 83
>UniRef50_O04603 Cluster: 50S ribosomal protein L5, chloroplast
precursor; n=43; cellular organisms|Rep: 50S ribosomal
protein L5, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 262
Score = 39.5 bits (88), Expect = 0.11
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +1
Query: 211 LTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
L A K + +TGQ+P+ +RAR ++ +F IR ++ + + T+RG
Sbjct: 105 LEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRG 148
>UniRef50_P49547 Cluster: Chloroplast 50S ribosomal protein L5; n=4;
Bacillariophyta|Rep: Chloroplast 50S ribosomal protein
L5 - Odontella sinensis (Marine centric diatom)
Length = 238
Score = 38.7 bits (86), Expect = 0.19
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 238 ALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAK 348
A+TGQ+P+ +RA+ + F IR N ++ + T+RG+K
Sbjct: 77 AITGQKPIITRAKKAIAGFKIRENMELGLTVTLRGSK 113
>UniRef50_Q6A6N8 Cluster: 50S ribosomal protein L5; n=125;
Bacteria|Rep: 50S ribosomal protein L5 -
Propionibacterium acnes
Length = 210
Score = 37.9 bits (84), Expect = 0.33
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 220 AAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
A + + A+TGQ+P ++AR ++ F +R + I H T+RG
Sbjct: 62 AIRDITAITGQKPQVTKARKSIAQFKLREGQPIGCHVTLRG 102
>UniRef50_A7DSY1 Cluster: Ribosomal protein L5; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L5
- Candidatus Nitrosopumilus maritimus SCM1
Length = 173
Score = 37.1 bits (82), Expect = 0.57
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
GD + A++ + ++G++P A+ T R +G+R+ E I V T+RG
Sbjct: 27 GDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRG 73
>UniRef50_Q74N79 Cluster: 50S ribosomal protein L5P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L5P -
Nanoarchaeum equitans
Length = 169
Score = 37.1 bits (82), Expect = 0.57
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKS 351
G++L +A + + LTGQ+PV ++A+ V + IR I V T+RG K+
Sbjct: 23 GEKLDKAYELLKRLTGQKPVKTKAKVRVEQWHIRPGLPIGVKVTLRGEKA 72
>UniRef50_A0RVY6 Cluster: Ribosomal protein L5; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L5 - Cenarchaeum
symbiosum
Length = 169
Score = 36.7 bits (81), Expect = 0.75
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
G+ + A + +G ++G++P A T R FG+R+ E I T+RG
Sbjct: 23 GNAVEVAKRALGEISGKKPCGRDAHETQRDFGVRKGEPIGAAVTIRG 69
Score = 35.9 bits (79), Expect = 1.3
Identities = 18/28 (64%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 422 GNFWLRYSEHIDL-GIKYXPLIGIYGLD 502
GNF EHID+ GIKY P IGI GLD
Sbjct: 96 GNFSFGIGEHIDIPGIKYDPGIGILGLD 123
>UniRef50_Q7VQD6 Cluster: 50S ribosomal protein L5; n=4;
Bacteria|Rep: 50S ribosomal protein L5 - Blochmannia
floridanus
Length = 190
Score = 36.7 bits (81), Expect = 0.75
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +1
Query: 211 LTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVR 339
L RA + + ++GQ+PV ++AR ++ SF IR+ ++I T+R
Sbjct: 50 LERAIEDLEMISGQKPVITKARKSIASFKIRQGQEIGCKVTLR 92
>UniRef50_A3GUR6 Cluster: 50S ribosomal protein L5; n=1; Vibrio
cholerae NCTC 8457|Rep: 50S ribosomal protein L5 -
Vibrio cholerae NCTC 8457
Length = 112
Score = 35.9 bits (79), Expect = 1.3
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 193 VNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAK 348
+N L AA + ++GQ+P+ ++AR +V F IR I T+RG +
Sbjct: 44 INDKKLLENAASDMAIISGQKPLITKARKSVAGFKIREGYPIGCKVTLRGER 95
>UniRef50_A5UL75 Cluster: Ribosomal protein L5p; n=1;
Methanobrevibacter smithii ATCC 35061|Rep: Ribosomal
protein L5p - Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861)
Length = 170
Score = 35.5 bits (78), Expect = 1.7
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKS 351
G++L+RA + + Q PV + ++ T FGIR+ + IA T+RG K+
Sbjct: 22 GEKLSRAITLLEQMFDQTPVKTFSKVTNPEFGIRKRQPIACKLTLRGEKA 71
Score = 34.7 bits (76), Expect = 3.0
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDL-GIKYXPLIGIYGLD 502
KA++ +E L+ I Q GN EHID+ G+KY P IGI+G++
Sbjct: 70 KADKAIEMVLEGINKNIKPTQFDAQGNLSFGIKEHIDIPGMKYNPDIGIFGMN 122
>UniRef50_Q8PV37 Cluster: 50S ribosomal protein L5P; n=6;
Methanomicrobia|Rep: 50S ribosomal protein L5P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 169
Score = 35.5 bits (78), Expect = 1.7
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKSR 354
G L A + + +TGQ+ V A+ T+ +F I++NE I T+RG +++
Sbjct: 23 GQHLVNAEEILKTITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQ 73
>UniRef50_P14124 Cluster: 50S ribosomal protein L5P; n=5;
Halobacteriaceae|Rep: 50S ribosomal protein L5P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 177
Score = 35.5 bits (78), Expect = 1.7
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVR 339
G L A +G +TGQ PV ++A+ TV F IR + I T+R
Sbjct: 32 GRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLR 77
>UniRef50_A5KRR2 Cluster: 50S ribosomal protein L5; n=1; candidate
division TM7 genomosp. GTL1|Rep: 50S ribosomal protein
L5 - candidate division TM7 genomosp. GTL1
Length = 194
Score = 34.3 bits (75), Expect = 4.0
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 241 LTGQQPVFSRARYTVRSFGIRRN-EKIAVHCTVRGAK 348
+TGQQPV AR ++ SF IR +I V T+RGA+
Sbjct: 70 ITGQQPVDRMARKSIASFKIRSGMNRIGVSVTLRGAR 106
>UniRef50_Q46GA8 Cluster: 50S ribosomal protein L5P; n=3;
Methanomicrobia|Rep: 50S ribosomal protein L5P -
Methanosarcina barkeri (strain Fusaro / DSM 804)
Length = 169
Score = 34.3 bits (75), Expect = 4.0
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +1
Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKSRR 357
G L A + + +TGQ+ V A+ T+ +F I++NE I T+RG ++++
Sbjct: 23 GQHLVDAEEILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQQ 74
>UniRef50_A7CZB2 Cluster: Ribosomal protein L5; n=1; Opitutaceae
bacterium TAV2|Rep: Ribosomal protein L5 - Opitutaceae
bacterium TAV2
Length = 204
Score = 33.9 bits (74), Expect = 5.3
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +1
Query: 226 KGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
+ +G + GQ+PV +++R V +F +R+ + + + T+RG
Sbjct: 64 RDLGNIAGQKPVLTKSRKAVSNFKLRQGQIVGAYVTLRG 102
>UniRef50_Q11I66 Cluster: Conserved repeat domain precursor; n=1;
Mesorhizobium sp. BNC1|Rep: Conserved repeat domain
precursor - Mesorhizobium sp. (strain BNC1)
Length = 972
Score = 33.5 bits (73), Expect = 7.0
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = -2
Query: 458 SQCVLNTEAKNYRGGEVVTPQFIFXDFSNPSQGFLLLLAPRTVQWTAIFSLRRIPKDRTV 279
S NT A NY G +TP+ D NP+ G +L L V I +P DR
Sbjct: 187 SAVATNTNASNYNAGPPITPRDDTTDVINPTNGPVLSLVKSYVD---INGGDVVPGDRLR 243
Query: 278 Y-LALENTGCCPVSAPTPLAARVSLSPG 198
+ +A NTG A + SL PG
Sbjct: 244 FRIAYRNTGATGADAQN-VNITDSLVPG 270
>UniRef50_Q6CKT5 Cluster: Similarity; n=1; Kluyveromyces lactis|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 191
Score = 33.1 bits (72), Expect = 9.3
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -3
Query: 505 KVQSINSNEGXVLDTQVNVF*IPKPKITVAEKLSRRNSYSXTFQTPLKDFF 353
++ ++N++ VLDTQ++VF + ++T + ++S QT +DFF
Sbjct: 52 EIHTVNTDTWVVLDTQIDVFLDTETEVTGSREVSVSQLVFLDLQTSFQDFF 102
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,581,302
Number of Sequences: 1657284
Number of extensions: 12262143
Number of successful extensions: 25693
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 25039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25680
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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