Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A17
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    79   6e-16
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    79   6e-16

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 43/73 (58%), Positives = 51/73 (69%)
 Frame = +1

Query: 133 SKNVNAESSYQKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNE 312
           ++N   E    K +L  S L   GDRLTRAAK +  L+GQ PVFS+ARYT+R FGIRRNE
Sbjct: 5   AQNPMKELRISKLVLNIS-LGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNE 63

Query: 313 KIAVHCTVRGAKS 351
           KIA H TVRG K+
Sbjct: 64  KIACHVTVRGPKA 76



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 31/53 (58%), Positives = 33/53 (62%)
 Frame = +2

Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
           KAEEILERGLK     +        GNF     EHIDLGIKY P IGIYG+DF
Sbjct: 75  KAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDF 127


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 43/73 (58%), Positives = 51/73 (69%)
 Frame = +1

Query: 133 SKNVNAESSYQKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNE 312
           ++N   E    K +L  S L   GDRLTRAAK +  L+GQ PVFS+ARYT+R FGIRRNE
Sbjct: 5   AQNPMKELRISKLVLNIS-LGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNE 63

Query: 313 KIAVHCTVRGAKS 351
           KIA H TVRG K+
Sbjct: 64  KIACHVTVRGPKA 76



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 31/53 (58%), Positives = 33/53 (62%)
 Frame = +2

Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
           KAEEILERGLK     +        GNF     EHIDLGIKY P IGIYG+DF
Sbjct: 75  KAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDF 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,236
Number of Sequences: 5004
Number of extensions: 52052
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)