Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_A17
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 81 1e-15
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 81 1e-15
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 80 2e-15
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 80 2e-15
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 37 0.018
04_03_0799 - 19805190-19805749,19806316-19806403 29 4.8
03_06_0394 + 33592780-33593310,33593890-33594013,33594233-335943... 28 8.3
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 80.6 bits (190), Expect = 1e-15
Identities = 45/76 (59%), Positives = 52/76 (68%)
Frame = +1
Query: 124 EGYSKNVNAESSYQKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIR 303
E N E QK +L SV GDRLTRA+K + L+GQ PVFS+ARYTVRSFGIR
Sbjct: 4 EKKQSNPMREIKVQKLVLNISV-GESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 304 RNEKIAVHCTVRGAKS 351
RNEKIA + TVRG K+
Sbjct: 63 RNEKIACYVTVRGEKA 78
Score = 49.2 bits (112), Expect = 4e-06
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +2
Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF--TSYXA 520
KA ++LE GLK + G F EHIDLGIKY P GIYG+DF A
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERA 136
Query: 521 G-QVQRSTQXA*DRKVDXPPLTRKML*XVPTEYDGIILIXXQVNIS 655
G +V R + + + +Y+G+IL Q N S
Sbjct: 137 GYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANTS 182
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 80.6 bits (190), Expect = 1e-15
Identities = 45/76 (59%), Positives = 52/76 (68%)
Frame = +1
Query: 124 EGYSKNVNAESSYQKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIR 303
E N E QK +L SV GDRLTRA+K + L+GQ PVFS+ARYTVRSFGIR
Sbjct: 4 EKKQSNPMREIKVQKLVLNISV-GESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 304 RNEKIAVHCTVRGAKS 351
RNEKIA + TVRG K+
Sbjct: 63 RNEKIACYVTVRGEKA 78
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 80.2 bits (189), Expect = 2e-15
Identities = 45/76 (59%), Positives = 52/76 (68%)
Frame = +1
Query: 124 EGYSKNVNAESSYQKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIR 303
E N E QK +L SV GDRLTRA+K + L+GQ PVFS+ARYTVRSFGIR
Sbjct: 30 EKKQSNPMREIKVQKLVLNISV-GESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 88
Query: 304 RNEKIAVHCTVRGAKS 351
RNEKIA + TVRG K+
Sbjct: 89 RNEKIACYVTVRGEKA 104
Score = 35.5 bits (78), Expect = 0.055
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3
Query: 378 KVXEYELRRDNFSATVIFGFGIQ 446
KV EYEL R NFS T FGFGIQ
Sbjct: 113 KVKEYELLRRNFSDTGCFGFGIQ 135
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIK 469
KA ++LE GLK + G F EHIDLGIK
Sbjct: 103 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 80.2 bits (189), Expect = 2e-15
Identities = 44/71 (61%), Positives = 51/71 (71%)
Frame = +1
Query: 139 NVNAESSYQKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKI 318
N E QK +L SV GDRLTRA+K + L+GQ PVFS+ARYTVRSFGIRRNEKI
Sbjct: 9 NPMREIKVQKLVLNISV-GESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKI 67
Query: 319 AVHCTVRGAKS 351
A + TVRG K+
Sbjct: 68 ACYVTVRGEKA 78
Score = 49.2 bits (112), Expect = 4e-06
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +2
Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF--TSYXA 520
KA ++LE GLK + G F EHIDLGIKY P GIYG+DF A
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERA 136
Query: 521 G-QVQRSTQXA*DRKVDXPPLTRKML*XVPTEYDGIILIXXQVNIS 655
G +V R + + + +Y+G+IL Q N S
Sbjct: 137 GYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANTS 182
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 37.1 bits (82), Expect = 0.018
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 127 GYSKNVNAESSYQKALL*TSVLVNPGDR--LTRAAKGVGALTGQQPVFSRARYTVRSFGI 300
GY+ NV+ +K ++ + G+ L A K + +TGQ PV ++A+ +V SF I
Sbjct: 95 GYT-NVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKI 153
Query: 301 RRNEKIAVHCTVRG 342
R I + T+RG
Sbjct: 154 REGNTIGIAVTLRG 167
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 285 HCIPSPXKYRLLSCECSNTLGG 220
HC P+P K + CEC++ GG
Sbjct: 124 HCCPAPPKPKPKPCECTHHCGG 145
>03_06_0394 +
33592780-33593310,33593890-33594013,33594233-33594376,
33594463-33594615,33594973-33595088,33595253-33595420,
33595514-33595744,33596229-33596378
Length = 538
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 241 VLQHPWRHESACHPDSP 191
VL+HPW H+S PD P
Sbjct: 316 VLEHPWLHDSKKMPDIP 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,091,345
Number of Sequences: 37544
Number of extensions: 342281
Number of successful extensions: 649
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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