Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A17
         (861 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)               91   1e-18
SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)             30   2.8  
SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      28   8.5  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score = 91.1 bits (216), Expect = 1e-18
 Identities = 61/136 (44%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
 Frame = +1

Query: 202 GDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRGAKSRRNP*EGFE- 378
           GDRLTRAAK +  LTGQQPVFS+ARYTVRSFGIRRNEKI+VHCTVRG K+     +G + 
Sbjct: 22  GDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKISVHCTVRGPKAEEILEKGLKV 81

Query: 379 KSXNMNCGVTTSPPR*FLASVFRTH*LGYQVXSPHWNLWTGLYVVLGRPGST*HTEXVRQ 558
           K   +  G  ++    F   +     LG +            +VVLGRPG    ++   +
Sbjct: 82  KEYELVKGCFSATGN-FGFGIQEHIDLGIKYDPSIGIYGMDFFVVLGRPGFN-ISKRKHK 139

Query: 559 ESGXPTPH---KEDAM 597
           +     PH   K+DAM
Sbjct: 140 QGRVGFPHRLTKDDAM 155



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +2

Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
           KAEEILE+GLK     +        GNF     EHIDLGIKY P IGIYG+DF
Sbjct: 70  KAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDF 122


>SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)
          Length = 283

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 245 VSAPTPLAARVSLSPGFTNTDVQSKAF 165
           +SAP PL A VSLS GF+  DV  +++
Sbjct: 3   ISAPVPLLAAVSLSCGFSLCDVCVRSY 29


>SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +3

Query: 141 CKCGIFISESFALNICVGESG*QADSCRQGCWSTHRTTACI 263
           C+ G   SES     C   SG Q  SC  GC S H    C+
Sbjct: 54  CQNGGTCSESLGTYRCNCMSGWQGLSCEVGCGSCHPNAYCM 94


>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = -1

Query: 399 AIHIL*LFKPLSRISSAFSSSDCTMDSNLFITTDTKRPHCIPSPXKYRLLS--------C 244
           A H++ +  P S+  + F  +D T+D +L   + + R   +P+  + RL S        C
Sbjct: 442 ACHVMFVASPSSKCDAPFGLADYTIDDSLLTASSSDRT-SVPAFARLRLQSKPGSSGAWC 500

Query: 243 ECSNTLG 223
              NTLG
Sbjct: 501 SAKNTLG 507


>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 443  SEHIDLGIKYXPLIGIYGLDFTSYXAGQVQRSTQXA*DRKVDXPPLTRKM 592
            S  ID  IK  P I ++        AGQ++R  Q A   ++  PP+   +
Sbjct: 972  SASIDDVIKQTPQISVHEYQLLQKEAGQLRRDLQAARQSRMKAPPVAESI 1021


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,956,222
Number of Sequences: 59808
Number of extensions: 402676
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)