Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A17
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...    91   9e-19
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...    91   1e-18
U41542-13|ABO16442.1|  390|Caenorhabditis elegans Hsn abnormal m...    28   7.4  
U41542-12|ABO16443.1|  392|Caenorhabditis elegans Hsn abnormal m...    28   7.4  
U40941-9|AAX55692.1|  294|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    28   9.8  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 49/76 (64%), Positives = 55/76 (72%)
 Frame = +1

Query: 124 EGYSKNVNAESSYQKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIR 303
           E  ++NV  E   QK  L   V    GDRLTRAAK +  LTGQ PVFS+ARYTVR+FGIR
Sbjct: 12  EKKARNVMRELKIQKLCLNICV-GESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIR 70

Query: 304 RNEKIAVHCTVRGAKS 351
           RNEKIAVHCTVRG K+
Sbjct: 71  RNEKIAVHCTVRGPKA 86



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +2

Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
           KAEEILE+GLK     +        GNF     EHIDLGIKY P IGIYG+DF
Sbjct: 85  KAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDF 137


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 49/76 (64%), Positives = 54/76 (71%)
 Frame = +1

Query: 124 EGYSKNVNAESSYQKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIR 303
           E   +NV  E   QK  L   V    GDRLTRAAK +  LTGQ PVFS+ARYTVR+FGIR
Sbjct: 12  EKKGRNVMRELKIQKLCLNICV-GESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIR 70

Query: 304 RNEKIAVHCTVRGAKS 351
           RNEKIAVHCTVRG K+
Sbjct: 71  RNEKIAVHCTVRGPKA 86



 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 30/53 (56%), Positives = 33/53 (62%)
 Frame = +2

Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
           KAEEILE+GLK     +        GNF     EHIDLGIKY P IGIYG+DF
Sbjct: 85  KAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDF 137


>U41542-13|ABO16442.1|  390|Caenorhabditis elegans Hsn abnormal
           migration protein2, isoform a protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 363 RISSAFSSSDCTMDSNLFITTDTKRPHCIPSPXKYRLLSCECSN 232
           R+ + F S  CT  +N   + DT R H        R+  C C N
Sbjct: 35  RMQAHFKSYTCTTCNNEIPSNDTLRSHMYRVHNITRMFMCRCCN 78


>U41542-12|ABO16443.1|  392|Caenorhabditis elegans Hsn abnormal
           migration protein2, isoform b protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 363 RISSAFSSSDCTMDSNLFITTDTKRPHCIPSPXKYRLLSCECSN 232
           R+ + F S  CT  +N   + DT R H        R+  C C N
Sbjct: 35  RMQAHFKSYTCTTCNNEIPSNDTLRSHMYRVHNITRMFMCRCCN 78


>U40941-9|AAX55692.1|  294|Caenorhabditis elegans Hypothetical
           protein F35C8.1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 275 LALENTGCCPVSAPTPLAARVSLSPGFT-NTDVQS 174
           +A+ +TGC   +AP  L   VS SPG++  +D+ S
Sbjct: 215 IAVSDTGCQQYTAPEILVKGVSNSPGYSIKSDIWS 249


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 363 RISSAFSSSDCTMDSNLFITTDTKRPHCIPSPXKYRLLS 247
           R S  F SS+C ++SNL+  T+     C  S    RLLS
Sbjct: 92  RCSILFQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,461,910
Number of Sequences: 27780
Number of extensions: 299608
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)