Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A17
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   8.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   8.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   8.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   8.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -2

Query: 380 FSNPSQGFLLLLAPRTVQWTAIFS-LRRIPKDRTVYLALENTGCCPVSAPTPLAARVSL 207
           +   + G   LL    VQ   I   +  I KD   YL+L +     V+  TPL +  +L
Sbjct: 76  YGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSLRSLLSADVAVATPLISMGAL 134



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 269 GLGIQCGLLVSVVMKRLLSIVQSEELKAEE 358
           G+ I  GL+  ++M+ L+    SEE K ++
Sbjct: 410 GIAIVSGLITGLIMRVLICGSISEEQKFDD 439


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 254 SLYFXGLGIQCGLLVSVVMKRLLSIVQS 337
           SL+   LGI+CG  +  +++  L I Q+
Sbjct: 462 SLFRINLGIECGYEIKKLLRYKLLISQN 489


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 461 PSQCVLNTEAKNYRGGEVVTPQF 393
           PS C    +   YR GEV TP F
Sbjct: 568 PSDC----DTLEYRNGEVTTPLF 586


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 298 IRRNEKIAVHCTVRG 342
           + RN+ +A+HC  +G
Sbjct: 721 VERNKHVALHCQAQG 735


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 298 IRRNEKIAVHCTVRG 342
           + RN+ +A+HC  +G
Sbjct: 717 VERNKHVALHCQAQG 731


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 228 GCWSTHRT 251
           GCW+ HRT
Sbjct: 328 GCWNEHRT 335


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 468 LIPKSMCSEYR 436
           L+PK  C+EYR
Sbjct: 250 LVPKHACAEYR 260


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 228 GCWSTHRT 251
           GCW+ HRT
Sbjct: 328 GCWNEHRT 335


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 228 GCWSTHRT 251
           GCW+ HRT
Sbjct: 328 GCWNEHRT 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,971
Number of Sequences: 438
Number of extensions: 3531
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)