Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A17
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)            79   5e-15
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)            79   5e-15
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)            79   5e-15
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo...    79   5e-15
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)            79   5e-15
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con...    40   0.003
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami...    28   7.0  

>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 
          Length = 182

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 42/63 (66%), Positives = 49/63 (77%)
 Frame = +1

Query: 163 QKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
           QK +L  SV    GDRLTRA+K +  L+GQ PVFS+ARYTVRSFGIRRNEKIA + TVRG
Sbjct: 17  QKLVLNISV-GESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG 75

Query: 343 AKS 351
            K+
Sbjct: 76  EKA 78



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 25/53 (47%), Positives = 29/53 (54%)
 Frame = +2

Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
           KA ++LE GLK     +        G F     EHIDLGIKY P  GIYG+DF
Sbjct: 77  KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF 129


>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 
          Length = 172

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 42/63 (66%), Positives = 49/63 (77%)
 Frame = +1

Query: 163 QKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
           QK +L  SV    GDRLTRA+K +  L+GQ PVFS+ARYTVRSFGIRRNEKIA + TVRG
Sbjct: 7   QKLVLNISV-GESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG 65

Query: 343 AKS 351
            K+
Sbjct: 66  EKA 68



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 25/53 (47%), Positives = 29/53 (54%)
 Frame = +2

Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
           KA ++LE GLK     +        G F     EHIDLGIKY P  GIYG+DF
Sbjct: 67  KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF 119


>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
          Length = 182

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 42/63 (66%), Positives = 49/63 (77%)
 Frame = +1

Query: 163 QKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
           QK +L  SV    GDRLTRA+K +  L+GQ PVFS+ARYTVRSFGIRRNEKIA + TVRG
Sbjct: 17  QKLVLNISV-GESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG 75

Query: 343 AKS 351
            K+
Sbjct: 76  EKA 78



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 25/53 (47%), Positives = 29/53 (54%)
 Frame = +2

Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
           KA ++LE GLK     +        G F     EHIDLGIKY P  GIYG+DF
Sbjct: 77  KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF 129


>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
           ribosomal protein L11, cytosolic, Arabidopsis thaliana,
           PIR:S49033
          Length = 182

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 42/63 (66%), Positives = 49/63 (77%)
 Frame = +1

Query: 163 QKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
           QK +L  SV    GDRLTRA+K +  L+GQ PVFS+ARYTVRSFGIRRNEKIA + TVRG
Sbjct: 17  QKLVLNISV-GESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG 75

Query: 343 AKS 351
            K+
Sbjct: 76  EKA 78



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 25/53 (47%), Positives = 29/53 (54%)
 Frame = +2

Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
           KA ++LE GLK     +        G F     EHIDLGIKY P  GIYG+DF
Sbjct: 77  KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF 129


>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
          Length = 172

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 42/63 (66%), Positives = 49/63 (77%)
 Frame = +1

Query: 163 QKALL*TSVLVNPGDRLTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
           QK +L  SV    GDRLTRA+K +  L+GQ PVFS+ARYTVRSFGIRRNEKIA + TVRG
Sbjct: 7   QKLVLNISV-GESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG 65

Query: 343 AKS 351
            K+
Sbjct: 66  EKA 68



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 25/53 (47%), Positives = 29/53 (54%)
 Frame = +2

Query: 347 KAEEILERGLKSXRI*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYGLDF 505
           KA ++LE GLK     +        G F     EHIDLGIKY P  GIYG+DF
Sbjct: 67  KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF 119


>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
           contains Pfam profiles PF00673: ribosomal L5P family
           C-terminus, PF00281: ribosomal protein L5
          Length = 262

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = +1

Query: 211 LTRAAKGVGALTGQQPVFSRARYTVRSFGIRRNEKIAVHCTVRG 342
           L  A K +  +TGQ+P+ +RAR ++ +F IR ++ + +  T+RG
Sbjct: 105 LEAAMKDIALITGQKPIKTRARASIATFKIREDQPLGIAVTLRG 148


>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
            protein similar to TAR RNA loop binding protein [Homo
            sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
            rRNA Methylase (RNA methyltransferase, TrmH) family
          Length = 1850

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 353  EEILERGLKSXR-I*IAA*QLLRHGNFWLRYSEHIDLGIKYXPLIGIYG 496
            E++LE G KS R I +AA   L     WL Y   I   IK   L+ +YG
Sbjct: 1211 EKVLEEGQKSPRTIRLAA---LHLSGLWLMYPRTIKYYIKELRLLTLYG 1256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,497,571
Number of Sequences: 28952
Number of extensions: 274749
Number of successful extensions: 573
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)