Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A16
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    28   2.0  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    27   2.7  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.7  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   6.2  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   8.2  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    26   8.2  

>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 227 LQYPDRHFPSCMSLYSRQQRTVQNTARRNPSSLNYS 120
           L  PDRH PS  S  + +  T    + RN  SL YS
Sbjct: 162 LPAPDRHTPSSASSRASETGTTSPQSMRNQISLLYS 197


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 104 PNQIGDYNSKMKGFYVLCFALFAAVYCKETYS 199
           P +    + ++ G ++LC  L A V CKE +S
Sbjct: 571 PEETYSLHRRLSGHFLLCAKLGAKVRCKELFS 602


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 365 AQKHLFKRFLEVVRTATSEYEAFKLNTIP-XESISMLCYPPSLILRKSI 508
           AQKH   R  ++ +  TS +   KL TIP  E+        +LI RK+I
Sbjct: 310 AQKHAINRISKLGKMITSNHAEEKLTTIPITEAKKESVSNTALIARKNI 358


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 167 FAAVYCKETYSSENDDL-DIEALVGNIDSLKAFIGCFL 277
           F   Y K+  SS N DL ++    G   +  AFI CFL
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFL 470


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 215 DRHFPSCMSLYSRQQRTVQNTARRNPSSL-NYSLQFDSEDLFY 90
           D     C+S +SR + T  +    +   L N+SL+ DS D FY
Sbjct: 563 DAFLDDCVSFFSRPEMTQDSQLNASSGFLTNFSLK-DSTDRFY 604


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +2

Query: 167 FAAVYCKETYSSENDDLDIEALVGNID-SLKAFIGCFLETSPCDAVSGGFQKDIPEAVAE 343
           F   + +  Y ++ND       + +ID S+K+F  C  E +   +  G   +D   A  +
Sbjct: 29  FVEKFAESLYETQNDG---SKKLSSIDGSIKSFAACLHELNRLKSRVGDRIRDYASASKQ 85

Query: 344 ACGKCTPAQKHLFKRFLEVV 403
              +      HL ++F +V+
Sbjct: 86  VQNEYHQKSNHLREKFAQVL 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,165
Number of Sequences: 5004
Number of extensions: 50039
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)