Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A16
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   29   6.6  
SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19)           29   6.6  
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_17734| Best HMM Match : zf-C2H2 (HMM E-Value=0.0003)                28   8.7  

>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = -3

Query: 312 NPPETASQGDVSKKHPIKAFRESIFPTKASISRSSFSELYVSLQ*TAANSA 160
           NP  T++  D ++  P +A  +S+ P+++    SSF++L  S   T +N++
Sbjct: 305 NPASTSTTNDENQPPPSQAQPQSMGPSESFAFTSSFNKLSNSTTITGSNAS 355


>SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19)
          Length = 426

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 285 PLATLFPGDFKRTFLKLWQKHVANVLQPRNIYSNVS--LKSSGQLPQNTK 428
           P +TL  G F+ +F++LW      ++QP    ++VS  + S   +P+N +
Sbjct: 286 PDSTLICGGFEDSFIQLWSLTPKKIVQPIGKMTDVSKIILSPDIIPENPR 335


>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 290 CDAVSGGFQKDIPEAVAEACGKC 358
           CDAV+G   K +P    E C KC
Sbjct: 642 CDAVTGKCYKCLPNVTGEHCEKC 664


>SB_17734| Best HMM Match : zf-C2H2 (HMM E-Value=0.0003)
          Length = 369

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -1

Query: 251 ENQYFPPKLQYPDRHFPSCMSLYSRQQRTVQNTARRNPSSLNYSLQFDSEDLFYTLHTPS 72
           E++Y   K+Q  + H    MSL    QR +QN + +N        Q + E     L  P 
Sbjct: 213 ESKYEQWKMQEDENHRRELMSLRQSLQREIQNMSTQNQQEKKALTQDEDE-----LDAPP 267

Query: 71  FFKPRIK 51
            F+P  K
Sbjct: 268 KFQPNNK 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,270,255
Number of Sequences: 59808
Number of extensions: 356670
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)