Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A16
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97795-1|CAA66379.1|  747|Homo sapiens RAD54 protein.                  31   4.2  
BC121060-1|AAI21061.1|  747|Homo sapiens RAD54-like (S. cerevisi...    31   4.2  
BC121059-1|AAI21060.1|  747|Homo sapiens RAD54-like (S. cerevisi...    31   4.2  
AY623117-1|AAT38113.1|  747|Homo sapiens RAD54-like (S. cerevisi...    31   4.2  
AL121602-1|CAI22117.1|  747|Homo sapiens RAD54-like (S. cerevisi...    31   4.2  

>X97795-1|CAA66379.1|  747|Homo sapiens RAD54 protein.
          Length = 747

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 317 KDIPEAVAEA-CGKCTPAQKHLFKRFLEVVRTATSEYEAFKLNTIPXESIS---MLCYPP 484
           K +P  + +  C + TP Q  L+KRFL   + A    E  K++     SI+    LC  P
Sbjct: 402 KYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEG-KMSVSSLSSITSLKKLCNHP 460

Query: 485 SLILRKSI 508
           +LI  K +
Sbjct: 461 ALIYDKCV 468


>BC121060-1|AAI21061.1|  747|Homo sapiens RAD54-like (S. cerevisiae)
           protein.
          Length = 747

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 317 KDIPEAVAEA-CGKCTPAQKHLFKRFLEVVRTATSEYEAFKLNTIPXESIS---MLCYPP 484
           K +P  + +  C + TP Q  L+KRFL   + A    E  K++     SI+    LC  P
Sbjct: 402 KYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEG-KMSVSSLSSITSLKKLCNHP 460

Query: 485 SLILRKSI 508
           +LI  K +
Sbjct: 461 ALIYDKCV 468


>BC121059-1|AAI21060.1|  747|Homo sapiens RAD54-like (S. cerevisiae)
           protein.
          Length = 747

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 317 KDIPEAVAEA-CGKCTPAQKHLFKRFLEVVRTATSEYEAFKLNTIPXESIS---MLCYPP 484
           K +P  + +  C + TP Q  L+KRFL   + A    E  K++     SI+    LC  P
Sbjct: 402 KYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEG-KMSVSSLSSITSLKKLCNHP 460

Query: 485 SLILRKSI 508
           +LI  K +
Sbjct: 461 ALIYDKCV 468


>AY623117-1|AAT38113.1|  747|Homo sapiens RAD54-like (S. cerevisiae)
           protein.
          Length = 747

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 317 KDIPEAVAEA-CGKCTPAQKHLFKRFLEVVRTATSEYEAFKLNTIPXESIS---MLCYPP 484
           K +P  + +  C + TP Q  L+KRFL   + A    E  K++     SI+    LC  P
Sbjct: 402 KYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEG-KMSVSSLSSITSLKKLCNHP 460

Query: 485 SLILRKSI 508
           +LI  K +
Sbjct: 461 ALIYDKCV 468


>AL121602-1|CAI22117.1|  747|Homo sapiens RAD54-like (S. cerevisiae)
           protein.
          Length = 747

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 317 KDIPEAVAEA-CGKCTPAQKHLFKRFLEVVRTATSEYEAFKLNTIPXESIS---MLCYPP 484
           K +P  + +  C + TP Q  L+KRFL   + A    E  K++     SI+    LC  P
Sbjct: 402 KYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEG-KMSVSSLSSITSLKKLCNHP 460

Query: 485 SLILRKSI 508
           +LI  K +
Sbjct: 461 ALIYDKCV 468


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,238,842
Number of Sequences: 237096
Number of extensions: 1669396
Number of successful extensions: 3736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3736
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)