Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A16
         (881 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ...    29   5.4  
At1g30170.1 68414.m03688 hypothetical protein contains Pfam prof...    28   7.2  
At5g46390.2 68418.m05710 peptidase S41 family protein similar to...    28   9.5  
At5g46390.1 68418.m05709 peptidase S41 family protein similar to...    28   9.5  
At4g35250.1 68417.m05010 vestitone reductase-related low similar...    28   9.5  

>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           gb:D86122
          Length = 785

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = +2

Query: 185 KETYSSENDDLDIEALVGNIDSLKAFI------GCFLETSPCDAVSGGFQK 319
           +E +S   DDL++ +L   +D L+ +       G  LET P D+++ GF +
Sbjct: 80  EELFSGLMDDLNLSSLPATLDDLEDYDLFGSGGGLELETDPYDSLNKGFSR 130


>At1g30170.1 68414.m03688 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 366

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 230 KLQYPDRHFPSCMSLYSRQQRTVQNTARRNPSSLNYSLQFDSED 99
           K Q P  HFP+    YS++ R            L+Y L F+  D
Sbjct: 166 KFQTPSDHFPTSNLTYSKRDRKFYLPGPGGHHLLSYDLDFNKAD 209


>At5g46390.2 68418.m05710 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 489

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 343 SMWQMYSSPETSIQTFP*SRQDSYLRIRSLQTKYDPQXKHFDALLSAVPNSKE 501
           S+  ++SSP +S+     +  D YL +    + ++    HFD+     PN +E
Sbjct: 54  SLTLVFSSPISSVA----ATNDPYLSVNPPSSSFESSLNHFDSAPEDCPNEEE 102


>At5g46390.1 68418.m05709 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 428

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 343 SMWQMYSSPETSIQTFP*SRQDSYLRIRSLQTKYDPQXKHFDALLSAVPNSKE 501
           S+  ++SSP +S+     +  D YL +    + ++    HFD+     PN +E
Sbjct: 54  SLTLVFSSPISSVA----ATNDPYLSVNPPSSSFESSLNHFDSAPEDCPNEEE 102


>At4g35250.1 68417.m05010 vestitone reductase-related low similarity
           to vestitone reductase [Medicago sativa subsp. sativa]
           GI:973249
          Length = 395

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 331 SCGRSMWQMYSSPETSIQTFP*SRQDSYLRIRSL 432
           S GR  W+   +PE +I  FP S   S  R RS+
Sbjct: 25  SSGRLSWRRSLTPENTIPLFPSSSSSSLNRERSI 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,140
Number of Sequences: 28952
Number of extensions: 258215
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)