Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_A15
(887 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05) 29 5.0
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5) 28 8.8
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 28 8.8
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 28 8.8
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 28 8.8
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = +3
Query: 492 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 671
S++P + R S GSL P +T+ TSRS PR+ S + + ST P TP
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRS-TPRSRS-----RSRARTPSTPSTPSTPSTP 232
Query: 672 SNTT 683
S T
Sbjct: 233 STIT 236
>SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)
Length = 435
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +2
Query: 428 INKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST-EDKQYL 604
+NK +H + D + IA+G + + ++ + PV E Y + T ED
Sbjct: 22 VNKYEHPIKSIEDLADQQGIAYGTAPGQLAEMLKTASLPVYEKLWRYIETHGTLEDNATY 81
Query: 605 KLDNTKGSSDDRIIYGDSTAD 667
+D + D I+ + D
Sbjct: 82 AIDKVRSRDDYAFIWDSAVLD 102
>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +1
Query: 400 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDH 579
DLH + Q +Q G + + + QQ ++ Q+Q QQ+ L + + + L
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQLQKKQQKQSSMEEKLSSE 617
Query: 580 VHR 588
+ +
Sbjct: 618 IEK 620
>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
Length = 260
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 329 SSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 204
S +F++ SI + A+L F F H+ AV+YS T
Sbjct: 130 SRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171
>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
Length = 734
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 536 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 655
FT + E K MS E+KQ K DN KG S+ + GD
Sbjct: 204 FTEMEEKIDEKVKEMSLEEKQPQKKDNQKGKSEKKKGKGD 243
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 501 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 602
P TK PP K T + R CPP T T
Sbjct: 136 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 169
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 501 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 602
P TK PP K T + R CPP T T
Sbjct: 150 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 183
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 501 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 602
P TK PP K T + R CPP T T
Sbjct: 164 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 197
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 501 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 602
P TK PP K T + R CPP T T
Sbjct: 178 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 211
>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 259
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 501 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 602
P TK PP K T + R CPP T T
Sbjct: 189 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 222
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 437 RDHHALKLIDQQNHNK-IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLD 613
R HH+ + + K + SKD T+ VS + + E ++ M+T +K +K+
Sbjct: 418 RRHHSFGGLPLEYREKRLRESSSKDNTNTSVSLEIKKIREAQKLIDAAMATSEKS-IKVG 476
Query: 614 NTKGSSDDR 640
+KG D +
Sbjct: 477 ESKGLWDSK 485
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,924,242
Number of Sequences: 59808
Number of extensions: 577375
Number of successful extensions: 1818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1818
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -