Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A14
         (945 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39435| Best HMM Match : 7tm_1 (HMM E-Value=4.60004e-41)             31   1.4  
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   29   5.5  
SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_39435| Best HMM Match : 7tm_1 (HMM E-Value=4.60004e-41)
          Length = 352

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 25/99 (25%), Positives = 39/99 (39%)
 Frame = +2

Query: 293 NYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFA 472
           N  +KK + + L      F    L F+VF   M  +        + A +   F  TA  +
Sbjct: 223 NRESKKKLAKLLASVTIAFYICVLPFAVFNIYMAADQQPKGESLFRADNLMAFIITASLS 282

Query: 473 RVHLNQGQFLYAFYIAVIQRSDCHGFRCSCSV*SIP*NV 589
            V+      LYAF  +  +R     F C C + S+  N+
Sbjct: 283 MVNSCLNPVLYAFQSSSYKRGFVRFFTCRCCISSMEHNI 321


>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 152 IKTKNVDAVFVEKQKKILSFFQDVSQLNTDD-EYYKIGKD---YDIEM 283
           I  + ++A  +EK K++L FF  +   N +D EY  I  +   Y +EM
Sbjct: 227 ILKEEIEAFSIEKMKEVLLFFDPIDVSNMEDFEYSHINAEDIMYSLEM 274


>SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 290 PYSFRYHSLCQF-YNIHHQCLVGSHLGRRTEFSFAFQQIRHP 168
           P+S+R    C+F   +H+ CL  +H  +  EF +   +   P
Sbjct: 68  PFSYRNKVFCRFDAAVHYDCLYVTHKKKHVEFRWLHIEFLQP 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,006,497
Number of Sequences: 59808
Number of extensions: 432494
Number of successful extensions: 999
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2764790632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)