Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A14
         (945 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    34   0.16 
At2g36305.1 68415.m04456 CAAX amino terminal protease family pro...    32   0.48 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    31   1.1  
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    31   1.1  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    31   1.1  
At1g09910.1 68414.m01115 expressed protein                             30   2.6  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    29   4.5  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    28   7.8  

>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +1

Query: 88  CLNSGWACSRRAQQCSTKAEHHKDKKCGCRIC*KAKENS--VLLPRCEPTK 234
           CL S W C   + + +   E    K+C C +C    EN    L   CEP K
Sbjct: 42  CLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDENKDPSLWLVCEPEK 92


>At2g36305.1 68415.m04456 CAAX amino terminal protease family
           protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
           (Prenyl protein-specific endoprotease 2)
           (Farnesylated-proteins converting enzyme 2) (FACE-2)
           from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
           Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
           profile PF02517 CAAX amino terminal protease family
           protein
          Length = 242

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -2

Query: 704 VNEVVVF---LVNAILSCGFRINEAILHLCYVNF-LQHFHIHKHFRVYFIRSRNNEXRGN 537
           V E +VF   ++  +L  GFRIN AI  LC V F L H +   HFR  +IR   +  R +
Sbjct: 93  VTEELVFRSCMIPLLLCAGFRINTAIF-LCPVLFSLAHLN---HFREMYIRHNRSYLRAS 148

Query: 536 QSAG*Q 519
              G Q
Sbjct: 149 LIVGLQ 154


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 308 KAVEEFLKMYRTGFMPKNLEFSVFYD 385
           KA+E F +MY+TG MP  + +S   D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 538 IRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 431
           + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 845 MEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 538 IRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 431
           + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 845 MEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At1g09910.1 68414.m01115 expressed protein
          Length = 675

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 76  NHEVCLNSGWACSRRAQQCSTKAEHHKDKK 165
           NHE  LN+G  CS    Q ++   H KD +
Sbjct: 14  NHETALNAGHHCSEGTDQGTSGLSHRKDHR 43


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 167 VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLK 331
           V A+ +EK++K L    D S      E+ K  KD+D+E   +    K+ VE+  K
Sbjct: 69  VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 233 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 328
           N +DEY K   DYD  + +D  T K+A  + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,377,559
Number of Sequences: 28952
Number of extensions: 296637
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)