Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A10
         (922 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.75 
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  

>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +2

Query: 353 KKKKXRXXXXKXKKKXXKKKXXXXKXXXXXXXXXKKKXXKKK 478
           KKKK +    K KKK  KKK    K         KKK  KKK
Sbjct: 149 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 190



 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 353 KKKKXRXXXXKXKKKXXKKKXXXXKXXXXXXXXXKKKXXKKK 478
           KKKK +    K KKK  KKK    K         KKK  KK+
Sbjct: 150 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKE 191



 Score = 29.5 bits (63), Expect = 4.0
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +2

Query: 359 KKXRXXXXKXKKKXXKKKXXXXKXXXXXXXXXKKKXXKKKXK 484
           KK +    K KKK  KKK    K         KKK  KKK K
Sbjct: 149 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 190



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 353 KKKKXRXXXXKXKKKXXKKKXXXXKXXXXXXXXXKKKXXKKK 478
           KKKK +    K KKK  KKK    K         KKK  K++
Sbjct: 151 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEE 192


>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 353 KKKKXRXXXXKXKKKXXKKKXXXXKXXXXXXXXXKKKXXKKK 478
           KK+K +    K KKK  KKK    K         KKK  KKK
Sbjct: 17  KKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKK 58



 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +1

Query: 352 KKKKKXXXXGKXKKKXXXKKXXXXKKXXXXXXXXKKKXXXKKXK 483
           +KK+K     K KKK   KK    KK        KKK   KK K
Sbjct: 16  EKKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKKK 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,336,206
Number of Sequences: 59808
Number of extensions: 28866
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)