Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_A09
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 215 5e-57
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 168 8e-43
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar... 28 1.5
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 27 3.4
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.4
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 7.9
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 26 7.9
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 215 bits (526), Expect = 5e-57
Identities = 104/204 (50%), Positives = 136/204 (66%)
Frame = +3
Query: 186 WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 365
W +V MGPPD I GITEAYKKD KK+NLG G YRDD GKP+VLPSVR+AE L S+ L
Sbjct: 40 WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99
Query: 366 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAKA 545
+ EYAPI+G ++ KLA+G+ IK+R + Q++SGTGAL + F+ Y +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157
Query: 546 KEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHAC 725
K I++ PTWGNH + + L K Y+Y+DP T G D++G L D++ P+GSIILLHAC
Sbjct: 158 KTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHAC 217
Query: 726 AHNPTGVDPQAQRLGTTFQGDQRK 797
AHNPTGVDP + + Q+K
Sbjct: 218 AHNPTGVDPTKAQWDDILKTMQKK 241
Score = 29.5 bits (63), Expect = 0.64
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 752 PSPATGNNFPR*SKKGNYSRFFDMAYQGFATG 847
P+ A ++ + +K N+ DMAYQGFA+G
Sbjct: 226 PTKAQWDDILKTMQKKNHFALLDMAYQGFASG 257
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 168 bits (409), Expect = 8e-43
Identities = 81/200 (40%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
Frame = +3
Query: 192 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRG-LN 368
N++ D I + Y +D PKKVN+ VGAYRDD GKP++LP+V+KA +I+ + N
Sbjct: 8 NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67
Query: 369 HEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAK-- 542
HEY PI+G +T A A++ F + ++ ++Q++SGTGA L FI Y K
Sbjct: 68 HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127
Query: 543 AKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQGALEDISKIPEGSIILLHA 722
+++ PTW H + L + Y Y+D K FD +G L I PEGSI LLHA
Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHA 187
Query: 723 CAHNPTGVDPQAQRLGTTFQ 782
CAHNPTG+DP ++ + F+
Sbjct: 188 CAHNPTGIDPTREQWLSIFE 207
>SPAC15E1.06 |vps29||retromer complex subunit
Vps29|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 724 HACNRIMEPSGIFDISSSAPCKSKPLVLGS 635
H C+ + G FDISS AP K + LGS
Sbjct: 51 HVCSDLKLVKGAFDISSKAPIAGK-ITLGS 79
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 632 VTVFLVRQVEGVADLRVVSPSRRREPDLLCLSVVFRYEL 516
+T L++ + G+ RV S RR P +LC S++ + L
Sbjct: 80 LTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSL 118
>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 159
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 365 ESSTVKNFFCLSDRRQNKWFSLIVSICSNP 276
ESST ++ L+ NKWF + +NP
Sbjct: 113 ESSTKTVYYVLAHLNDNKWFGVATQKTNNP 142
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 344 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 237
F C+ D R N +LI S CS FF +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 344 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 237
F C+ D R N +LI S CS FF +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,865,976
Number of Sequences: 5004
Number of extensions: 90421
Number of successful extensions: 250
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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