Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A07
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   6.3  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    26   8.3  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   8.3  

>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 345 FSAILQPKEAGLELSCGELWCKVERNLRVXPFFEVAQSTVNTGVN 211
           F  +LQ K AG  +S  +LW +      V P    A +T ++  N
Sbjct: 220 FEQVLQKKNAGFNVSITDLWGRALALKLVNPLTGGANTTFSSVTN 264


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 217 PCVNSRLCHLKKGXNAXVSFDFTPQFSTTKLKTGLFGLKNGAEIPF 354
           PC+++ L  +     A    +FT   +TT+   G  GL+ GA I F
Sbjct: 429 PCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDF 474


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 519 HIWLSLSSFQSFHLNSKFPVGSFFPICKXKV*GLSFAGFG 400
           HIWL +     F+ NSK    +F P     V G S   FG
Sbjct: 241 HIWL-IKERHYFNQNSKLRCAAFHPTSNLLVVGFSSGLFG 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,237
Number of Sequences: 5004
Number of extensions: 34428
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)