Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A07
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46110.1 68418.m05669 phosphate/triose-phosphate translocator...    29   5.5  
At4g16640.1 68417.m02515 matrix metalloproteinase, putative meta...    28   7.2  
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof...    28   7.2  

>At5g46110.1 68418.m05669 phosphate/triose-phosphate translocator,
           putative identical to phosphate/triose-phosphate
           translocator precursor [Arabidopsis thaliana]
           gi|3983125|gb|AAC83815; similar to triose
           phosphate/phosphate translocator, chloroplast precursor
           (CTPT)[Cauliflower]{Brassica oleracea} SWISS-PROT:P52177
          Length = 410

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/76 (26%), Positives = 29/76 (38%)
 Frame = +2

Query: 47  LLRXXCXASACPXWLSPLGCXSLHFSAVVSLXSTSSPQGXVGXWXPARVLXTXSELTPVL 226
           LLR        P    P+G     FS   S   +  P G +G       L +  +L P+L
Sbjct: 6   LLRATANVVGIPKLRRPIGAIHRQFSTASSSSFSVKPIGGIG---EGANLISGRQLRPIL 62

Query: 227 TVDCATSKKGKTRRFL 274
            +D +    G+ R  L
Sbjct: 63  LLDSSAINGGEKREIL 78


>At4g16640.1 68417.m02515 matrix metalloproteinase, putative
           metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 364

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 268 VSFDFTPQFSTTKLKTGLFGLKNGAEIPFDAL 363
           VSF+    F+T  LK G +   +G  +PFD +
Sbjct: 199 VSFEEVDDFTTADLKIGFYAGDHGDGLPFDGV 230


>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 301

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 337 GAEIPFDALYNADACTLTSCPTE 405
           G EI F+ +YN D  T T  PTE
Sbjct: 241 GREIRFEEVYNEDVQTRTKAPTE 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,853,198
Number of Sequences: 28952
Number of extensions: 187416
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)