Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A05
         (1192 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   4.5  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   7.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 11/53 (20%), Positives = 21/53 (39%)
 Frame = -2

Query: 297 HHAXVGEGATPTDEPGKDRPPGRVRSPAENPGPLHHARSPFVRXTKRQANIRR 139
           H    G  A  +D   ++RP  + R P     P+        +  K+  N+++
Sbjct: 30  HQQIYGIWADDSDNDEEERPSFKSRKPKNYSAPIGFVAGGVQQAGKKPENVKK 82


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = +2

Query: 128 KNVRRRMFAWRLVXRTNGLRAWCKGPGFSAGERTRPGGRSFPGSSVGVAPSPTXA*WVG 304
           KN+     AWR   ++N  +     P   A   + P  R F   +  + P PT    VG
Sbjct: 16  KNISALNGAWRWECKSNYCQKAPITPDTEATGLSLPACRLFCSEAAALWPKPTGEVHVG 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,034
Number of Sequences: 336
Number of extensions: 5113
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 34630457
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)