Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A05
         (1192 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)          34   0.26 
SB_43994| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.59 
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.8  
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)                   31   2.4  
SB_27672| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.4  
SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)                   30   3.2  
SB_23785| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.2  
SB_23564| Best HMM Match : zf-CCHC (HMM E-Value=0.015)                 30   3.2  
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)            30   4.2  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               29   5.5  
SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14)                    29   5.5  
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 29   9.6  

>SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)
          Length = 351

 Score = 33.9 bits (74), Expect = 0.26
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
 Frame = -3

Query: 584 CLXPLGV*GGAFGLSQAT--------GVASLXGANNRQLPFVRKGCWLPR 459
           C+  LGV  G     Q T        G+ SL   NN+ +P V  GCW+P+
Sbjct: 200 CMGALGVENGTITEGQMTASSYLEKYGMPSLARLNNKHIPAVTNGCWVPK 249


>SB_43994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 444 HGXKESGQPTXLSYKWKLAVVRPPKGSNPGGLAQPE-SPPSNPQRXQTRGRKNEPQEFMV 620
           +G ++ G+P     K K     PP G  P      E S P+ P+R + +G KN+P++ + 
Sbjct: 296 NGKRKRGRPKGSKNKPK-----PPPGEQPESTTPQEPSDPNKPKRGRPKGSKNKPKDPLR 350

Query: 621 F 623
           F
Sbjct: 351 F 351


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
 Frame = +3

Query: 426  QTWGNEHGXKESGQPTXLSYKWKLA-----VVRPPKGSNPGGLAQP 548
            Q WGN H    +G P+ +   W  +      V P  G+N  GL  P
Sbjct: 1584 QLWGNSHPGAATGFPSQVPSMWSFSGGAPRDVEPQSGTNENGLVSP 1629


>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
          Length = 516

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 267 PTDEPGKDRPPGRVRSPAENPGPLHHARSPFVRXT 163
           P+D PG   P   + +P   P P H + SP +  T
Sbjct: 57  PSDSPGPMSPEPEIMTPTPEPSPKHRSPSPKLTKT 91


>SB_27672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 423 NQTWGNEHGXKESGQPTXLS-YKWKLAVVRPPKGSNPGGLAQPESPPSNPQ 572
           N+TW  E    ESG  T  S  + K  + +   G NP G+  P S   NP+
Sbjct: 8   NETWNPESMLLESGIHTLGSEIQKKKKIPKSTTGKNPHGIRNPHSRIPNPE 58


>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
          Length = 1268

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 502 LFAPXREATPVAWLNPKAPPQTPKGXKQGEERMNPK 609
           +F P  E  P+ W +P      PK  K  +E++ P+
Sbjct: 449 IFEPVPEGEPITWCSPLVVQPKPKYTKTDKEKLEPQ 484


>SB_23785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 872

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 502 LFAPXREATPVAWLNPKAPPQTPKGXKQGEERMNPK 609
           +F P  E  P+ W +P      PK  K  +E++ P+
Sbjct: 319 IFEPVPEGEPITWCSPLVVQPKPKYTKTDKEKLEPQ 354


>SB_23564| Best HMM Match : zf-CCHC (HMM E-Value=0.015)
          Length = 667

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 502 LFAPXREATPVAWLNPKAPPQTPKGXKQGEERMNPK 609
           +F P  E  P+ W +P      PK  K  +E++ P+
Sbjct: 514 IFEPVPEGDPITWCSPLVVQPKPKYTKTDKEKLEPQ 549


>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
          Length = 821

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 267 PTDEPGKDRPPGRVRSPAENPGPLHHARSPFVRXTKRQANIRRRT 133
           P  E  K RPPGRV +    PG + +   P  R T  +    R T
Sbjct: 464 PGRETNKKRPPGRVTNKKRQPGRVTNGERPPGRVTNEKRPPIRET 508


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 270 TPTDEPGKDRPPGRVRSPAENPGPLHHARSPF 175
           +PT   G   PP   RSPA +P P   A  PF
Sbjct: 327 SPTPLKGSSIPPSPNRSPAASPAPSPSAVKPF 358


>SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14)
          Length = 682

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 502 LFAPXREATPVAWLNPKAPPQTPKGXKQGEERMNPK 609
           +F P  E  P+ W +P      PK  K  +E++ P+
Sbjct: 423 IFEPVPEGEPINWCSPLVVQPKPKYTKTDKEKLEPQ 458


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 180 GFGHGAKGPGFRRANERAPAAGLSPVHRWGSPLRQXGRDGSGIGAKKEFPNGGG 341
           GF    +GP  RR++ R   +GL P   W   L+   R+   +     F +G G
Sbjct: 365 GFSSRGRGPPPRRSDFRVQVSGLPPTGSW-QDLKDHMREAGDVLFTDVFKDGTG 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,959,083
Number of Sequences: 59808
Number of extensions: 677465
Number of successful extensions: 2242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2223
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3680846520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)