Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_A05
(1192 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 31 1.6
U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen prote... 30 3.7
Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical pr... 29 4.9
X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein. 29 4.9
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 4.9
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 4.9
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 6.5
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 29 6.5
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 6.5
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 29 6.5
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 29 8.5
AB009362-1|BAA23766.1| 118|Caenorhabditis elegans protein ( Cae... 29 8.5
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 31.1 bits (67), Expect = 1.6
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +3
Query: 210 FRRANERAPAAGLSPVHRWGSPLRQXGRDGSGIGAKKEFPNGGGERRAQKQG 365
+ R RA AAG P R GS G G G G+ + GGG R + G
Sbjct: 195 YGRRGRRADAAGHYPSQRGGSGGGGGGGGGGGYGSGGGWGGGGGGRDRDRGG 246
>U58755-13|AAB00702.1| 348|Caenorhabditis elegans Collagen protein
113 protein.
Length = 348
Score = 29.9 bits (64), Expect = 3.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 510 PPKGSNPGGLAQPESPPSNPQRXQTRGRKNEP 605
PP + P G PE PP NP R GR+ P
Sbjct: 162 PPGETGPSG---PEGPPGNPGRIGEHGREGYP 190
>Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical
protein W09C2.1b protein.
Length = 416
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 195 HHARSPFVRXTKRQANIRRRTFFELCVC 112
HHAR P V+ KRQ N ++RT E C
Sbjct: 249 HHAR-PLVKPKKRQQNAQKRTGIECVNC 275
>Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical
protein W09C2.1a protein.
Length = 488
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 195 HHARSPFVRXTKRQANIRRRTFFELCVC 112
HHAR P V+ KRQ N ++RT E C
Sbjct: 321 HHAR-PLVKPKKRQQNAQKRTGIECVNC 347
>X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein.
Length = 416
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 195 HHARSPFVRXTKRQANIRRRTFFELCVC 112
HHAR P V+ KRQ N ++RT E C
Sbjct: 249 HHAR-PLVKPKKRQQNAQKRTGIECVNC 275
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.5 bits (63), Expect = 4.9
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 PPKGSNPGGLAQPESPPSNPQRXQTRGRKNEPQEFMVFEXXF-QTSPXPNGYVXP 671
PP+ P AQP P PQ+ + G PQ ++ + Q P P+G P
Sbjct: 707 PPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPHGQYQP 761
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.5 bits (63), Expect = 4.9
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 PPKGSNPGGLAQPESPPSNPQRXQTRGRKNEPQEFMVFEXXF-QTSPXPNGYVXP 671
PP+ P AQP P PQ+ + G PQ ++ + Q P P+G P
Sbjct: 707 PPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPHGQYQP 761
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 29.1 bits (62), Expect = 6.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 279 EGATPTDEPGKDRPPGRVRSPAENPGP 199
+GA+PT PG PPG PA PGP
Sbjct: 240 DGASPTAAPGAAGPPG-PPGPAGAPGP 265
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.1 bits (62), Expect = 6.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 279 EGATPTDEPGKDRPPGRVRSPAENPGP 199
+GA+PT PG PPG PA PGP
Sbjct: 239 DGASPTAAPGAAGPPG-PPGPAGAPGP 264
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 29.1 bits (62), Expect = 6.5
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 321 LFWPQYPTHHAXVGEGATPTDEPGKDRPPGRVRSPAENPGP 199
LF PQ P A G+G P +PG D PPG + E+ P
Sbjct: 195 LFPPQCPCE-APPGDGGPP-GQPGPDGPPGAPGNAGEDGKP 233
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +3
Query: 513 PKGSNPGGLAQPESPPSNPQRXQTRGRKNEPQEFMVFEXXFQTSPXPNGYVXP 671
P G P G A P+ PP P G P + E P P G P
Sbjct: 179 PGGDAPPGEAGPKGPPGPPGSPGAPGEPGRPGDDAPSEPLIPGEPGPQGPPGP 231
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 29.1 bits (62), Expect = 6.5
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 321 LFWPQYPTHHAXVGEGATPTDEPGKDRPPGRVRSPAENPGP 199
LF PQ P A G+G P +PG D PPG + E+ P
Sbjct: 176 LFPPQCPCE-APPGDGGPP-GQPGPDGPPGAPGNAGEDGKP 214
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 28.7 bits (61), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 220 ARRKPGPFAPCPKPICSTYQAPSKHSSSHIL*TLCVF 110
A+ +P P A C P CST + H +S + LC F
Sbjct: 431 AKNQPPPHAACTLPHCSTMKEVLTHMTSCNVGRLCHF 467
>AB009362-1|BAA23766.1| 118|Caenorhabditis elegans protein (
Caenorhabditis elegansmRNA, partial cds. ).
Length = 118
Score = 28.7 bits (61), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 220 ARRKPGPFAPCPKPICSTYQAPSKHSSSHIL*TLCVF 110
A+ +P P A C P CST + H +S + LC F
Sbjct: 35 AKNQPPPHAACTLPHCSTMKEVLTHMTSCNVGRLCHF 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,435,259
Number of Sequences: 27780
Number of extensions: 522518
Number of successful extensions: 1868
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1857
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3265985354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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