Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A02
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.038
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.038
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -2

Query: 417 PXPXPPPXXXXXGGXXPPPPXXXXXXGGXXXXPPP 313
           P P PPP     GG  PPPP       G    PPP
Sbjct: 748 PIPVPPP-APIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -2

Query: 417 PXPXPPPXXXXXGGXXPPPPXXXXXXGGXXXXPP 316
           P P PPP     G   PPPP      GG     P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = -2

Query: 417 PXPXPPPXXXXXGGXXPPPPXXXXXXGGXXXXPPPXGGAXP 295
           P P PPP      G  PPPP       G      P   A P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
 Frame = -2

Query: 417 PXPXPPPXXXXXGGXXP-PPPXXXXXXGGXXXXPPPXG--GAXPP 292
           P P PP          P P P      GG    PPP G  GA PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -2

Query: 417  PXPXPPPXXXXXGGXXPPPPXXXXXXGGXXXXPPP 313
            P P PPP         PPPP       G    PPP
Sbjct: 1705 PTPPPPPMSV------PPPPSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/51 (27%), Positives = 14/51 (27%)
 Frame = -2

Query: 444 GGGXXXXXXPXPXPPPXXXXXGGXXPPPPXXXXXXGGXXXXPPPXGGAXPP 292
           G G      P P PPP     G    PP              P  G   PP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,272
Number of Sequences: 5004
Number of extensions: 18736
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)