Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A01
         (1371 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0820 - 21749477-21749866,21751192-21751590                       35   0.13 
02_05_0686 - 30900748-30902167,30903442-30904742                       32   1.2  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   6.5  
06_03_1310 + 29238644-29240260                                         29   6.5  
10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643     29   8.6  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   8.6  

>07_03_0820 - 21749477-21749866,21751192-21751590
          Length = 262

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 999  HXGLPXXXXSTXSLHTHSLXPXPPXLXSPSPXXPXTXLSRR 1121
            +  LP    S+ S  THSL P PP L  P P  P     RR
Sbjct: 19   YKALPLSSPSSSSSSTHSLLPRPPALWPPPPPPPPHGCERR 59


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 16/59 (27%), Positives = 18/59 (30%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXPXXXIXXPGMXPPXGR 849
           PPP          P P     P     +   PP    GPP   P      P   PP G+
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +2

Query: 719 PXPXPTXPXPLXXLXPPRTXXPALPLXXPXXXSXXPGXPP 838
           P P P  P P   L PP    P LP   P      P  PP
Sbjct: 291 PPPPPAFPFPFPQL-PPLPHFPPLPSFYPSPPPPPPPPPP 329


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDS-XTGPPSXXPXXXIXXPG-MXPP 840
           PPPS         P P     P  S   S  PP S    PPS         PG + PP
Sbjct: 399 PPPSSPTPSHLPPPPPTYSESPKSSMPPSTSPPSSHGASPPSSSSSPPTEHPGYVLPP 456


>10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643
          Length = 532

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 725 PXPTXPXPLXXLXPPRTXXPALPLXXP 805
           P PT P PL  +  P +  P LPL  P
Sbjct: 221 PPPTPPRPLPDMAGPSSATPLLPLQLP 247


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXPXXXIXXPGMXPP 840
           PPP +        P P     P     R   PP   T PP   P      P   PP
Sbjct: 267 PPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPP 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,760
Number of Sequences: 37544
Number of extensions: 201617
Number of successful extensions: 787
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4329950544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)