Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A01
         (1371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)                       30   3.7  
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       30   4.9  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   30   4.9  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  30   4.9  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   8.6  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   8.6  

>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/60 (26%), Positives = 19/60 (31%)
 Frame = +1

Query: 667 IXPPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXPXXXIXXPGMXPPXG 846
           + PPP  +       P     P P   T +   PP    GPP   P      P   P  G
Sbjct: 344 VNPPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNG 403


>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
          Length = 315

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 725 PXPTXPXPLXXLXPPRTXXPALPLXXPXXXSXXPGXP 835
           P  T P P+  + PPRT  P +P   P      P  P
Sbjct: 163 PPRTQPPPIFPIDPPRTQPPPIPPIDPPRTQPPPIPP 199



 Score = 30.3 bits (65), Expect = 3.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 725 PXPTXPXPLXXLXPPRTXXPALPLXXPXXXSXXPGXP 835
           P  T P P+  + PPRT  P +P   P      P  P
Sbjct: 176 PPRTQPPPIPPIDPPRTQPPPIPPIDPPRTQPPPIPP 212



 Score = 30.3 bits (65), Expect = 3.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 725 PXPTXPXPLXXLXPPRTXXPALPLXXPXXXSXXPGXP 835
           P  T P P+  + PPRT  P +P   P      P  P
Sbjct: 189 PPRTQPPPIPPIDPPRTQPPPIPPIDPPRTQPPPIFP 225


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +1

Query: 766 PPDSXTGPPSXXPXXXIXXPGMXPPXGRXXXXXLHXXGLPP 888
           PP     PP   P   +  PGM PP G          G+PP
Sbjct: 236 PPMGAPPPPHSMPPPGMPPPGMMPPPGFPPMGMPGMGGMPP 276


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 17/59 (28%), Positives = 19/59 (32%)
 Frame = +1

Query: 664 EIXPPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXPXXXIXXPGMXPP 840
           +I P PS         P P   P P         PP +   PP   P      PG  PP
Sbjct: 434 KIAPLPSLRASAATLPPLPSDEPPPLPPDEEKPPPPPAPALPPLPLPPELPGSPGDSPP 492


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXPXXXIXXPGMXPP 840
           PPP  S       P P   P P         PP     PP   P      P   PP
Sbjct: 372 PPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427



 Score = 29.5 bits (63), Expect = 6.5
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXPXXXIXXPGMXPP 840
           PPPS         P P   P P         PP     PP   P      P   PP
Sbjct: 374 PPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPP 429



 Score = 29.1 bits (62), Expect = 8.6
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXPXXXIXXPGMXPP 840
           PPP          P P   P PS        PP     PP   P      P   PP
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP 421


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPS 795
           PPP R        P P   P P      S  PP    GPPS
Sbjct: 251 PPPMRGPTSGGEPPPPKNAP-PPPKRGSSNPPPPPTRGPPS 290


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPS 795
           PPP R        P P   P P      S  PP    GPPS
Sbjct: 163 PPPMRGPTSGGEPPPPKNAP-PPPKRGSSNPPPPPTRGPPS 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,763,437
Number of Sequences: 59808
Number of extensions: 155042
Number of successful extensions: 424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4354715267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)