Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_A01
         (1371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    36   0.088
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    36   0.088
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   7.7  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 35.5 bits (78), Expect = 0.088
 Identities = 19/58 (32%), Positives = 19/58 (32%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXPXXXIXXPGMXPPXG 846
           PPPS         P P   P P         PP S  GPP          PGM  P G
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 346



 Score = 30.3 bits (65), Expect = 3.3
 Identities = 24/77 (31%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXP-----XXXIXXPGMXP 837
           PPP  S      TP P   P     T R   PP S   PP   P           PGM P
Sbjct: 264 PPPPPSV-----TPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318

Query: 838 PXGRXXXXXLHXXGLPP 888
           P            G+PP
Sbjct: 319 PPPPSRFGPPGMGGMPP 335


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 35.5 bits (78), Expect = 0.088
 Identities = 19/58 (32%), Positives = 19/58 (32%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXPXXXIXXPGMXPPXG 846
           PPPS         P P   P P         PP S  GPP          PGM  P G
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 356



 Score = 30.3 bits (65), Expect = 3.3
 Identities = 24/77 (31%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
 Frame = +1

Query: 673 PPPSRSXXXXXXTPXPXXXPHPSXSTXRSXXPPDSXTGPPSXXP-----XXXIXXPGMXP 837
           PPP  S      TP P   P     T R   PP S   PP   P           PGM P
Sbjct: 274 PPPPPSV-----TPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328

Query: 838 PXGRXXXXXLHXXGLPP 888
           P            G+PP
Sbjct: 329 PPPPSRFGPPGMGGMPP 345


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
 Frame = +1

Query: 652 PXXVEIXPPPSRSXXXXXXTPXPXXXPHPSXST----XRSXXPPDSXTGPPSXXP 804
           P   E  PPP +        P P    H S S+     +   PP    GPP   P
Sbjct: 247 PPVQEFAPPPPQQQQQQFQAPPPPMASHSSISSTPVQQQGFAPPQQFGGPPPSGP 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,382,510
Number of Sequences: 27780
Number of extensions: 128957
Number of successful extensions: 265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3871284216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)