Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P23
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   4.9  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   6.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.5  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   6.5  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   8.5  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 719  RSYLSNYIMEQT*TYLATDYCIGVEVITNHXGSLLGVRRLVFCDRT 582
            RS L+ +  EQ    L + Y +  +   NH  ++LG R  +F + T
Sbjct: 997  RSILAEF--EQLTPPLHSPYSVNAKAADNHPVAILGAREYIFSENT 1040


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 525 VCGIWIRTPTFLPVVWSRRSSVTKDQTSD 611
           + G+ IR   F P V S +S + KDQ+S+
Sbjct: 635 MAGLDIRKEPFTPAVPSAKSGLKKDQSSE 663


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 648  NTYTIICCQICLSLFHN 698
            NT TIICC+  + L HN
Sbjct: 1056 NTTTIICCEPVIGLGHN 1072


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 561 AEKWVFLSRSHTPEPDAVIPDLPPICLFRSIVACAFLF 448
           AEKWV L+    P  D V+  +   C    +    F F
Sbjct: 357 AEKWVLLNGQRCPTCDRVVERIDGCCHMNCLCGTHFCF 394


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 275 GKVFGTLGQNDDGLFGKXGYNR-EIFNDDRGKLTGQAYGTRVLGPGGDSTNYG 430
           GK  G +G + D        +R   F   RG     +Y TRV G GG  T+YG
Sbjct: 166 GKFIG-VGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,982
Number of Sequences: 5004
Number of extensions: 62269
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)