Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P23
         (911 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.56 
SB_47127| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_32567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)                  28   9.1  
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)                     28   9.1  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 32/109 (29%), Positives = 41/109 (37%)
 Frame = +2

Query: 263 QMGGGKVFGTLGQNDDGLFGKXGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLD 442
           Q G G  FGT      GLFG  G N        G +TG  +G         ST +GG   
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGGFGS 104

Query: 443 WANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKNTHFSAGGMVSKEFG 589
            A  N       N    G    T +G+G++   +   F  GG  +  FG
Sbjct: 105 TAGTNTGGLFG-NTAASG----TTTGTGLFGQTQGAAF--GGTSTSGFG 146


>SB_47127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 168 MQKFTDLLITQKIIRSGGSPQGDTLVTSLGTNKW 269
           M+ FTD LI+  I+ S     GD LV      +W
Sbjct: 1   MKHFTDTLISANIVESNSCSPGDPLVLERPPPRW 34


>SB_32567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 168 MQKFTDLLITQKIIRSGGSPQGDTLVTSLGTNKW 269
           M+ FTD LI+  II S     GD LV      +W
Sbjct: 1   MKHFTDTLISANIISSNSCSPGDPLVLERPPPRW 34


>SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)
          Length = 141

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 539 DKNTHFSAGGMVSKEFGHKRPDVGLQAEIRHD 634
           + +  F  G ++ +EFGHKRP    +A    D
Sbjct: 64  EMDEEFGIGELIHEEFGHKRPSSSRKAYTSRD 95


>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
          Length = 1222

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 338 REIFNDDRGKLTGQAYGT---RVLG-PGGDSTNYGGRLDWANKNAQATI 472
           R ++ND   +L G +      R +  PG   T Y  R+D   KN+Q TI
Sbjct: 633 RTLYNDSDSRLGGMSTSLAEFRTINLPGSSVTKYMERIDEIRKNSQRTI 681


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,021,950
Number of Sequences: 59808
Number of extensions: 526502
Number of successful extensions: 1473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)