Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P23
         (911 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X58183-1|CAA41170.1|  386|Drosophila melanogaster heterogeneous ...    29   6.7  
X62636-1|CAA44502.1|  326|Drosophila melanogaster hrp36.1 protein.     29   8.8  
X54803-1|CAA38574.1|  386|Drosophila melanogaster Hrb87F protein.      29   8.8  
AY060471-1|AAL25510.1|  323|Drosophila melanogaster SD05789p pro...    29   8.8  
AE014296-638|AAN11559.1|  323|Drosophila melanogaster CG12016-PB...    29   8.8  
AE014296-637|AAF47759.2|  323|Drosophila melanogaster CG12016-PA...    29   8.8  

>X58183-1|CAA41170.1|  386|Drosophila melanogaster heterogeneous
           nuclear ribonucleoproteinprotein.
          Length = 386

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
 Frame = +2

Query: 269 GGGKVFGTLGQNDDGLFGKXGYNREIFNDDRGKLTGQAYGTRVLGPGGD--STNYGGRLD 442
           GG +  G  GQ D G  G  G+  +   +  G   G+  G      GG+      GG   
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGRGGGGGFGNSGGNFGGGQGGGSGG 264

Query: 443 WANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKNTHFSAGG 568
           W  +        N Q GG  G    G G      N++ S GG
Sbjct: 265 WNQQGGTGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306


>X62636-1|CAA44502.1|  326|Drosophila melanogaster hrp36.1 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
 Frame = +2

Query: 269 GGGKVFGTLGQNDDGLFGKXGYNREIFNDDRGKLTGQAYGTRVLGPGGD--STNYGGRLD 442
           GG +  G  GQ D G  G  G+  +   +  G   G   G      GG+      GG   
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264

Query: 443 WANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKNTHFSAGG 568
           W  +        N Q GG  G    G G      N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306


>X54803-1|CAA38574.1|  386|Drosophila melanogaster Hrb87F protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 2/102 (1%)
 Frame = +2

Query: 269 GGGKVFGTLGQNDDGLFGKXGYNREIFNDDRGKLTGQAYGTRVLGPGGD--STNYGGRLD 442
           GG +  G  GQ D G  G  G+  +   +  G   G   G      GG+      GG   
Sbjct: 206 GGPRAGGRGGQGDRGQ-GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGG 264

Query: 443 WANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKNTHFSAGG 568
           W  +        N Q GG  G    G G      N++ S GG
Sbjct: 265 WNQQGGSGGGPWNNQGGGNGGWNGGGGGGGYGGGNSNGSWGG 306


>AY060471-1|AAL25510.1|  323|Drosophila melanogaster SD05789p
           protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 326 LFQRVHHRFVPKCQRPCLPPFVCPK*RHEGVALRAAP*SNNLL 198
           +  R+ H F  +C+ P   P VCP  +     L   P +NN++
Sbjct: 273 VLHRIVHYFKERCEVPAPAPVVCPPQQKRFGMLYMGPSNNNVM 315


>AE014296-638|AAN11559.1|  323|Drosophila melanogaster CG12016-PB,
           isoform B protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 326 LFQRVHHRFVPKCQRPCLPPFVCPK*RHEGVALRAAP*SNNLL 198
           +  R+ H F  +C+ P   P VCP  +     L   P +NN++
Sbjct: 273 VLHRIVHYFKERCEVPAPAPVVCPPQQKRFGMLYMGPSNNNVM 315


>AE014296-637|AAF47759.2|  323|Drosophila melanogaster CG12016-PA,
           isoform A protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 326 LFQRVHHRFVPKCQRPCLPPFVCPK*RHEGVALRAAP*SNNLL 198
           +  R+ H F  +C+ P   P VCP  +     L   P +NN++
Sbjct: 273 VLHRIVHYFKERCEVPAPAPVVCPPQQKRFGMLYMGPSNNNVM 315


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,332,147
Number of Sequences: 53049
Number of extensions: 750196
Number of successful extensions: 1919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1919
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4464466254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)