Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P22
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   5.6  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   5.6  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   7.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.8  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 363 RRRSEPFEIACRDSVNLCYMTTHPLTVTLM 274
           R + EP   +CR S+N  Y+     +VT M
Sbjct: 48  RVKEEPIYESCRFSINQPYLNHFDNSVTPM 77


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 363 RRRSEPFEIACRDSVNLCYMTTHPLTVTLM 274
           R + EP   +CR S+N  Y+     +VT M
Sbjct: 48  RVKEEPIYESCRFSINQPYLNHFDNSVTPM 77


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 431 VCWWADPASLRAQK 472
           +C+W  P SLR +K
Sbjct: 459 ICFWYVPKSLRGRK 472


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 357 RSEPFEIACRDSVNLCYMTTHPLTVTLM 274
           + EP   +CR S+N  Y+     +VT M
Sbjct: 50  KEEPIYESCRFSINQPYLNHFDNSVTPM 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,790
Number of Sequences: 336
Number of extensions: 3008
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)