Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P22
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    79   1e-15
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    79   1e-15
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.6  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    26   6.3  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 42/81 (51%), Positives = 54/81 (66%)
 Frame = +2

Query: 104 QVFGRKKTATAVAYCKRGHGNAACNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRV 283
           Q FG+K  ATAVA+CK G G    NG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV
Sbjct: 5   QCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRV 64

Query: 284 TVKGWVVM*HKFTLSRQAISK 346
            V G   +   + + RQAISK
Sbjct: 65  RVSGGGHVSQIYAI-RQAISK 84



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 27/71 (38%), Positives = 40/71 (56%)
 Frame = +1

Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477
           GGHV+Q+YAI  +  K + +   + +  +  + ++K  L+ YDR+LLV  PR    PKK 
Sbjct: 69  GGHVSQIYAIRQAISKAIVAYYQKFV-DEHSKAELKKALITYDRTLLVADPR-RMEPKKF 126

Query: 478 GWSXXPRARYQ 510
           G     RAR Q
Sbjct: 127 G-GHGARARQQ 136



 Score = 34.3 bits (75), Expect = 0.024
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 345 KALIAFYQKYVDEASKKENQRHPSSIR*EFAGGLTPRRCEPKK 473
           KA++A+YQK+VDE SK E ++   +          PRR EPKK
Sbjct: 84  KAIVAYYQKFVDEHSKAELKKALITYDRTLLVA-DPRRMEPKK 125


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 42/81 (51%), Positives = 54/81 (66%)
 Frame = +2

Query: 104 QVFGRKKTATAVAYCKRGHGNAACNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRV 283
           Q FG+K  ATAVA+CK G G    NG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV
Sbjct: 5   QCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRV 64

Query: 284 TVKGWVVM*HKFTLSRQAISK 346
            V G   +   + + RQAISK
Sbjct: 65  RVSGGGHVSQIYAI-RQAISK 84



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 27/71 (38%), Positives = 40/71 (56%)
 Frame = +1

Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477
           GGHV+Q+YAI  +  K + +   + +  +  + ++K  L+ YDR+LLV  PR    PKK 
Sbjct: 69  GGHVSQIYAIRQAISKAIVAYYQKFV-DEHSKAELKKALITYDRTLLVADPR-RMEPKKF 126

Query: 478 GWSXXPRARYQ 510
           G     RAR Q
Sbjct: 127 G-GHGARARQQ 136



 Score = 34.3 bits (75), Expect = 0.024
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 345 KALIAFYQKYVDEASKKENQRHPSSIR*EFAGGLTPRRCEPKK 473
           KA++A+YQK+VDE SK E ++   +          PRR EPKK
Sbjct: 84  KAIVAYYQKFVDEHSKAELKKALITYDRTLLVA-DPRRMEPKK 125


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 265 HGRHQSDSQGVGGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG 444
           H  + SD+ G  GH  Q +  P  Y +R  SPS + + T      ++     YD+ +L+ 
Sbjct: 210 HSPYPSDN-GFPGHRRQTHFAPYYYPQRATSPSLKQVPTYLGTHVLQQDQSTYDQKVLMP 268

Query: 445 *PRVAASPKK 474
                +SP +
Sbjct: 269 PASYLSSPNQ 278


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 90  AHQAVKYSDVRKPPPQLRIASVVMGM 167
           AHQ  ++ ++ KP P +R+ S+  G+
Sbjct: 205 AHQICQHFELIKPSPNIRVMSITGGL 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,417
Number of Sequences: 5004
Number of extensions: 51078
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)