BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP04_F_P22 (892 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 79 1e-15 SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 79 1e-15 SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 3.6 SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 6.3 >SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Schizosaccharomyces pombe|chr 1|||Manual Length = 140 Score = 78.6 bits (185), Expect = 1e-15 Identities = 42/81 (51%), Positives = 54/81 (66%) Frame = +2 Query: 104 QVFGRKKTATAVAYCKRGHGNAACNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRV 283 Q FG+K ATAVA+CK G G NG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV Sbjct: 5 QCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRV 64 Query: 284 TVKGWVVM*HKFTLSRQAISK 346 V G + + + RQAISK Sbjct: 65 RVSGGGHVSQIYAI-RQAISK 84 Score = 41.1 bits (92), Expect = 2e-04 Identities = 27/71 (38%), Positives = 40/71 (56%) Frame = +1 Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477 GGHV+Q+YAI + K + + + + + + ++K L+ YDR+LLV PR PKK Sbjct: 69 GGHVSQIYAIRQAISKAIVAYYQKFV-DEHSKAELKKALITYDRTLLVADPR-RMEPKKF 126 Query: 478 GWSXXPRARYQ 510 G RAR Q Sbjct: 127 G-GHGARARQQ 136 Score = 34.3 bits (75), Expect = 0.024 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +3 Query: 345 KALIAFYQKYVDEASKKENQRHPSSIR*EFAGGLTPRRCEPKK 473 KA++A+YQK+VDE SK E ++ + PRR EPKK Sbjct: 84 KAIVAYYQKFVDEHSKAELKKALITYDRTLLVA-DPRRMEPKK 125 >SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosaccharomyces pombe|chr 2|||Manual Length = 140 Score = 78.6 bits (185), Expect = 1e-15 Identities = 42/81 (51%), Positives = 54/81 (66%) Frame = +2 Query: 104 QVFGRKKTATAVAYCKRGHGNAACNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRV 283 Q FG+K ATAVA+CK G G NG PL LV+P +L+ K+ EPIL+ G +KF+ VDIRV Sbjct: 5 QCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRV 64 Query: 284 TVKGWVVM*HKFTLSRQAISK 346 V G + + + RQAISK Sbjct: 65 RVSGGGHVSQIYAI-RQAISK 84 Score = 41.1 bits (92), Expect = 2e-04 Identities = 27/71 (38%), Positives = 40/71 (56%) Frame = +1 Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477 GGHV+Q+YAI + K + + + + + + ++K L+ YDR+LLV PR PKK Sbjct: 69 GGHVSQIYAIRQAISKAIVAYYQKFV-DEHSKAELKKALITYDRTLLVADPR-RMEPKKF 126 Query: 478 GWSXXPRARYQ 510 G RAR Q Sbjct: 127 G-GHGARARQQ 136 Score = 34.3 bits (75), Expect = 0.024 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +3 Query: 345 KALIAFYQKYVDEASKKENQRHPSSIR*EFAGGLTPRRCEPKK 473 KA++A+YQK+VDE SK E ++ + PRR EPKK Sbjct: 84 KAIVAYYQKFVDEHSKAELKKALITYDRTLLVA-DPRRMEPKK 125 >SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizosaccharomyces pombe|chr 2|||Manual Length = 372 Score = 27.1 bits (57), Expect = 3.6 Identities = 19/70 (27%), Positives = 32/70 (45%) Frame = +1 Query: 265 HGRHQSDSQGVGGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG 444 H + SD+ G GH Q + P Y +R SPS + + T ++ YD+ +L+ Sbjct: 210 HSPYPSDN-GFPGHRRQTHFAPYYYPQRATSPSLKQVPTYLGTHVLQQDQSTYDQKVLMP 268 Query: 445 *PRVAASPKK 474 +SP + Sbjct: 269 PASYLSSPNQ 278 >SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 648 Score = 26.2 bits (55), Expect = 6.3 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = +3 Query: 90 AHQAVKYSDVRKPPPQLRIASVVMGM 167 AHQ ++ ++ KP P +R+ S+ G+ Sbjct: 205 AHQICQHFELIKPSPNIRVMSITGGL 230 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,773,417 Number of Sequences: 5004 Number of extensions: 51078 Number of successful extensions: 127 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 125 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 448490560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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