Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P22
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                           79   6e-15
11_01_0155 - 1287003-1287452                                           79   6e-15
05_04_0199 + 18980017-18980759,18981478-18981532                       29   3.8  
02_05_1340 + 35797923-35799881                                         28   8.7  
01_06_0818 - 32220143-32220160,32220556-32220663,32220749-322209...    28   8.7  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 39/85 (45%), Positives = 54/85 (63%)
 Frame = +2

Query: 92  PSGRQVFGRKKTATAVAYCKRGHGNAACNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 271
           P   Q FGRKKTA AV+YCK G G    NG P++L+ P +L+ K  EPILL G+ +F  +
Sbjct: 10  PGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDI 69

Query: 272 DIRVTVKGWVVM*HKFTLSRQAISK 346
           D+R+ V+G       + + RQAI+K
Sbjct: 70  DMRIRVRGGGKTSQIYAI-RQAIAK 93



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 27/71 (38%), Positives = 41/71 (57%)
 Frame = +1

Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477
           GG  +Q+YAI  +  K L +   + +  +  ++++KDI  +YDR+LLV  PR    PKK 
Sbjct: 78  GGKTSQIYAIRQAIAKALVAYYQKYV-DEASKKEVKDIFARYDRTLLVADPR-RCEPKKF 135

Query: 478 GWSXXPRARYQ 510
           G     RAR+Q
Sbjct: 136 G-GRGARARFQ 145



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 24/43 (55%), Positives = 28/43 (65%)
 Frame = +3

Query: 345 KALIAFYQKYVDEASKKENQRHPSSIR*EFAGGLTPRRCEPKK 473
           KAL+A+YQKYVDEASKKE +   +           PRRCEPKK
Sbjct: 93  KALVAYYQKYVDEASKKEVKDIFARYDRTLLVA-DPRRCEPKK 134


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 39/85 (45%), Positives = 54/85 (63%)
 Frame = +2

Query: 92  PSGRQVFGRKKTATAVAYCKRGHGNAACNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 271
           P   Q FGRKKTA AV+YCK G G    NG P++L+ P +L+ K  EPILL G+ +F  +
Sbjct: 10  PGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDI 69

Query: 272 DIRVTVKGWVVM*HKFTLSRQAISK 346
           D+R+ V+G       + + RQAI+K
Sbjct: 70  DMRIRVRGGGKTSQIYAI-RQAIAK 93



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 27/71 (38%), Positives = 41/71 (57%)
 Frame = +1

Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477
           GG  +Q+YAI  +  K L +   + +  +  ++++KDI  +YDR+LLV  PR    PKK 
Sbjct: 78  GGKTSQIYAIRQAIAKALVAYYQKYV-DEASKKEVKDIFARYDRTLLVADPR-RCEPKKF 135

Query: 478 GWSXXPRARYQ 510
           G     RAR+Q
Sbjct: 136 G-GRGARARFQ 145



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 24/43 (55%), Positives = 28/43 (65%)
 Frame = +3

Query: 345 KALIAFYQKYVDEASKKENQRHPSSIR*EFAGGLTPRRCEPKK 473
           KAL+A+YQKYVDEASKKE +   +           PRRCEPKK
Sbjct: 93  KALVAYYQKYVDEASKKEVKDIFARYDRTLLVA-DPRRCEPKK 134


>05_04_0199 + 18980017-18980759,18981478-18981532
          Length = 265

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = +1

Query: 202 AQTAAVQTSRANPFARQGKILHGRHQSDSQGVGGHVAQVYAIPTS 336
           A  AAV  + A PFA    + H    S S G G HV  VY  P S
Sbjct: 12  AAAAAVAVAAA-PFAAASAMPHPSSSSRSAGGGHHVPSVYPPPPS 55


>02_05_1340 + 35797923-35799881
          Length = 652

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 260 IFPCRAKGLALEVCTAAVW 204
           IFP R +GL + +C+ A W
Sbjct: 560 IFPTRVRGLCIAICSLAFW 578


>01_06_0818 -
           32220143-32220160,32220556-32220663,32220749-32220992,
           32221599-32221834,32222058-32222248,32222330-32222567,
           32222672-32222890
          Length = 417

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 322 RKLVLHD--HPPLDCHSDVDHGEFFLAEQKDWLLKFVLQQSGLNQVQWTAVT 173
           +K+ LH+  HP +   +DV  GE F  E  DW    V   +  + +++  +T
Sbjct: 21  QKVPLHNRWHPDIPPVADVTEGELFRVEMVDWTGGRVSDDNSADDIKFLDLT 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,696,213
Number of Sequences: 37544
Number of extensions: 386453
Number of successful extensions: 981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)