Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P22
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_16157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = +1

Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477
           GGH +++YAI  +  K L +   + +  +  +++I+DILVQYDRSLLV  PR     KK 
Sbjct: 36  GGHTSRIYAIRQAISKSLVAYYQKYV-DEVSKKEIRDILVQYDRSLLVADPR-RTEAKKF 93

Query: 478 GWSXXPRARYQ 510
           G     R+RYQ
Sbjct: 94  G-GPGARSRYQ 103



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = +2

Query: 221 KLQEPILLLGKEKFSMVDIRVTVKGWVVM*HKFTLSRQAISK 346
           K++EPILLLGKE+F  VDIRV VKG       + + RQAISK
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAI-RQAISK 51


>SB_16157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 259 ILHGRHQSDSQGVGGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLL 438
           ++ GR    +   GGH  ++        KRL    ++   TK   +  K++L +Y+  + 
Sbjct: 95  VIRGREPRAAASTGGHPPRILTFQEVTIKRLLRGKSKVNKTKGFEKFTKNLLTRYNARVY 154

Query: 439 VG*PRVAASPKK 474
              P+V   P K
Sbjct: 155 TA-PKVKLEPNK 165


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 244 QKDWLLKFVLQQSGLNQVQWTAVTRSIPM-TTLAIRNCGGGFLTSEYLTA*WASRSC 77
           ++DW +K++ ++   +Q+ W A  R IP   T+A R    G L  E LT     RSC
Sbjct: 575 EQDWAMKYLPRKYRESQIDWFA-KRGIPWHITVATRRREDGSL--ELLTLVHVFRSC 628


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,836,802
Number of Sequences: 59808
Number of extensions: 416257
Number of successful extensions: 989
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)