Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P22
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...    93   2e-19
AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical...    29   3.4  
AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical...    29   4.5  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 45/81 (55%), Positives = 61/81 (75%)
 Frame = +2

Query: 104 QVFGRKKTATAVAYCKRGHGNAACNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRV 283
           Q FGRKKTATAVA+CK+G G    NGRPL+ +EP++L+ KLQEP+LL+GKE+F  VDIR+
Sbjct: 9   QTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRI 68

Query: 284 TVKGWVVM*HKFTLSRQAISK 346
            V G   +   + + RQA++K
Sbjct: 69  RVSGGGHVAQIYAV-RQALAK 88



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 30/71 (42%), Positives = 42/71 (59%)
 Frame = +1

Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477
           GGHVAQ+YA+  +  K L +   + +  +  +R++K+I   YD+SLLV  PR   S KK 
Sbjct: 73  GGHVAQIYAVRQALAKALVAYYHKYV-DEQSKRELKNIFAAYDKSLLVADPRRRES-KKF 130

Query: 478 GWSXXPRARYQ 510
           G     RARYQ
Sbjct: 131 G-GPGARARYQ 140



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +3

Query: 345 KALIAFYQKYVDEASKKE 398
           KAL+A+Y KYVDE SK+E
Sbjct: 88  KALVAYYHKYVDEQSKRE 105


>AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical
           protein Y48G1C.8 protein.
          Length = 828

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 222 NFKSQSFCSARKNSPWSTSE*QSR-GGWSCSTSLRYPDKLFQKALIAFY 365
           NFK  S  S RK    ST    SR GGW      R P  +  KA  AFY
Sbjct: 185 NFKLLSEKSVRKKKQKSTVPIFSREGGWLLDKPPRLPPLVPHKACFAFY 233


>AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical
           protein Y53F4B.22 protein.
          Length = 374

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -2

Query: 411 DVFDFPSLRLRLHISGRRRSEPFEIACRDSVNLCYMTTHPLTVTLMSTMENFSLP 247
           DV ++  + LR       RS  FEI      N CY+   P  V   S   +++LP
Sbjct: 188 DVTEYLRVLLRREGYEFHRSNEFEIVREMKENACYLALDPTKVENNSVKSSYALP 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,941
Number of Sequences: 27780
Number of extensions: 298201
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)