Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P22
         (892 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...    85   8e-17
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...    80   2e-15
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)            79   3e-15

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 36/64 (56%), Positives = 48/64 (75%)
 Frame = +2

Query: 104 QVFGRKKTATAVAYCKRGHGNAACNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRV 283
           Q FGRKKTATAV YCKRG G    NG P++L +P +L++K+ EP+LLLGK +F+ VD+R+
Sbjct: 11  QCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRI 70

Query: 284 TVKG 295
              G
Sbjct: 71  RATG 74



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 30/71 (42%), Positives = 44/71 (61%)
 Frame = +1

Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477
           GG+ ++VYAI  S  K L +   + +  +  +++IKDIL++YDR+LLV  PR   S KK 
Sbjct: 75  GGNTSRVYAIRQSIAKALVAYYQKYV-DEQSKKEIKDILMRYDRTLLVADPRRCES-KKF 132

Query: 478 GWSXXPRARYQ 510
           G     RAR+Q
Sbjct: 133 G-GPGARARFQ 142



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 22/43 (51%), Positives = 25/43 (58%)
 Frame = +3

Query: 345 KALIAFYQKYVDEASKKENQRHPSSIR*EFAGGLTPRRCEPKK 473
           KAL+A+YQKYVDE SKKE +               PRRCE KK
Sbjct: 90  KALVAYYQKYVDEQSKKEIKDILMRYDRTLLVA-DPRRCESKK 131


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 35/64 (54%), Positives = 48/64 (75%)
 Frame = +2

Query: 104 QVFGRKKTATAVAYCKRGHGNAACNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRV 283
           Q FGRKKTA AV +CKRG G    NG P++L +P +L++K+ EPILLLGK +F+ V++R+
Sbjct: 11  QCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRI 70

Query: 284 TVKG 295
            V G
Sbjct: 71  RVNG 74



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 33/71 (46%), Positives = 44/71 (61%)
 Frame = +1

Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477
           GGH +QVYAI  S  K L +   + +  +  +++IKDILV+YDR+LLV  PR    PKK 
Sbjct: 75  GGHTSQVYAIRQSIAKALVAYYQKYV-DEQSKKEIKDILVRYDRTLLVADPR-RCEPKKF 132

Query: 478 GWSXXPRARYQ 510
           G     R+RYQ
Sbjct: 133 G-GRGARSRYQ 142



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = +3

Query: 345 KALIAFYQKYVDEASKKENQRHPSSIR*EFAGGLT-PRRCEPKK 473
           KAL+A+YQKYVDE SKKE +     +R +    +  PRRCEPKK
Sbjct: 90  KALVAYYQKYVDEQSKKEIK--DILVRYDRTLLVADPRRCEPKK 131


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 34/64 (53%), Positives = 48/64 (75%)
 Frame = +2

Query: 104 QVFGRKKTATAVAYCKRGHGNAACNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRV 283
           Q FGRKKTA AV +CKRG G    NG P++L +P +L++K+ EP+LLLGK +F+ V++R+
Sbjct: 11  QCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRI 70

Query: 284 TVKG 295
            V G
Sbjct: 71  RVNG 74



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 33/71 (46%), Positives = 44/71 (61%)
 Frame = +1

Query: 298 GGHVAQVYAIPTSYFKRL*SPSTRNM*TKPQRRKIKDILVQYDRSLLVG*PRVAASPKKX 477
           GGH +QVYAI  S  K L +   + +  +  +++IKDILV+YDR+LLV  PR    PKK 
Sbjct: 75  GGHTSQVYAIRQSIAKALVAYYQKYV-DEQSKKEIKDILVRYDRTLLVADPR-RCEPKKF 132

Query: 478 GWSXXPRARYQ 510
           G     R+RYQ
Sbjct: 133 G-GRGARSRYQ 142



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = +3

Query: 345 KALIAFYQKYVDEASKKENQRHPSSIR*EFAGGLT-PRRCEPKK 473
           KAL+A+YQKYVDE SKKE +     +R +    +  PRRCEPKK
Sbjct: 90  KALVAYYQKYVDEQSKKEIK--DILVRYDRTLLVADPRRCEPKK 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,671
Number of Sequences: 28952
Number of extensions: 284479
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)