Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P21
         (938 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    27   0.19 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    27   0.19 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   9.2  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 379 KRXIP*KLWQXACGKCTPAPENIYSNVSLKVVXDKLPQXXXAFKTKYDPQG 531
           KR +P  L +  C  C+   + I   V ++ + D  P+     + KYDP G
Sbjct: 64  KRNLPDAL-ENECSPCSEKQKKIADKV-VQFLIDNKPEIWVLLEAKYDPTG 112


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 379 KRXIP*KLWQXACGKCTPAPENIYSNVSLKVVXDKLPQXXXAFKTKYDPQG 531
           KR +P  L +  C  C+   + I   V ++ + D  P+     + KYDP G
Sbjct: 64  KRNLPDAL-ENECSPCSEKQKKIADKV-VQFLIDNKPEIWVLLEAKYDPTG 112


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 96  NSAQRPSFFKPRMEIKI 46
           +SA+RPSF  PR ++ I
Sbjct: 755 HSAKRPSFISPRSQLII 771


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 403 WQXACGKCTPAP 438
           WQ +C  C+P P
Sbjct: 385 WQMSCVACSPPP 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,948
Number of Sequences: 438
Number of extensions: 3350
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)