Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P18
         (882 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              254   9e-68
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   38   0.008
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)                 30   2.9  
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)                 30   2.9  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   5.0  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   6.6  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   6.6  
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  254 bits (621), Expect = 9e-68
 Identities = 117/152 (76%), Positives = 132/152 (86%)
 Frame = +1

Query: 184 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 363
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 364 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVR 543
           KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 544 RYVVKRVLPAKEGKENAKPRHKAPKIQRLVTP 639
           +YV++R LP KEGK   K + KAPKIQRLVTP
Sbjct: 122 QYVIRRPLPEKEGK---KAKSKAPKIQRLVTP 150


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -1

Query: 324 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 160
           V L  Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 539 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 628
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 539 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 628
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 370 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 510
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 190 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 273
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 460 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 558
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 508 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 627
           + F+++KEDD+  Y++   L  +  K NA   ++ P+  R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,837,821
Number of Sequences: 59808
Number of extensions: 507027
Number of successful extensions: 1465
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)