Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P16
         (995 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0145 - 12749288-12751510                                         31   1.9  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   2.9  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   3.3  
06_01_0099 + 824557-825532,826090-826245,826422-828064                 29   5.8  

>09_03_0145 - 12749288-12751510
          Length = 740

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
 Frame = -2

Query: 916 PPXPPKGXXPP----XGXSXGRAPPPXP 845
           PP PP G  PP     G   GR PPP P
Sbjct: 32  PPPPPPGIQPPPPALPGMPHGRPPPPFP 59


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = -2

Query: 916 PPXPPKGXXPPXGXSXGRAPPPXPXXXXXXXXXXXXXKXXRGXXXKFXPXGGGXAP 749
           PP PP    PP   + G  PPP P             K  +G      P GG   P
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK--KGGPPPPPPKGGASRP 389



 Score = 25.0 bits (52), Expect(2) = 2.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 474 PKXXPPPPPP 445
           PK  PPPPPP
Sbjct: 332 PKAAPPPPPP 341



 Score = 23.4 bits (48), Expect(2) = 2.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 462 PPPPPPG 442
           PPPPPPG
Sbjct: 365 PPPPPPG 371


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
           PP PP    PP G     +PPP P
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPP 567


>06_01_0099 + 824557-825532,826090-826245,826422-828064
          Length = 924

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 916 PPXPPKGXXPPXGXSXGRAPPP 851
           PP PP+   PP   S  R PPP
Sbjct: 423 PPSPPQQQLPPASSSKPRRPPP 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,121,048
Number of Sequences: 37544
Number of extensions: 302592
Number of successful extensions: 3676
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2949
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2916970260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)