Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_P16
(995 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 30 2.5
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 29 4.4
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 29 4.4
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 4.4
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 7.8
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 7.8
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16) 25 8.5
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 30.3 bits (65), Expect = 2.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 913 PXPPKGXXPPXGXSXGRAPPPXP 845
P PP PP S G APPP P
Sbjct: 297 PPPPSRGAPPPPPSRGSAPPPPP 319
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 918 PXPPPQRGXXPRXGXXGGEPPP 853
P PPP RG P G PPP
Sbjct: 287 PPPPPSRGAAPPPPSRGAPPPP 308
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.9 bits (64), Expect = 3.4
Identities = 21/75 (28%), Positives = 22/75 (29%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXPXXXXXXXXXXXXXKXXRGXXXKFXPXGGGXAPGGKX 737
P P G P G + PP P G P GG AP
Sbjct: 900 PSQTPGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPG--GSAPSQPPPPGGNAPPPPP 957
Query: 736 XTXXXXPPXGGGAXP 692
PP GGGA P
Sbjct: 958 PPGGSAPPPGGGAPP 972
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPP 851
PP PP G PP G PPP
Sbjct: 955 PPPPPGGSAPPPGGGAPPLPPP 976
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 29.5 bits (63), Expect = 4.4
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP PP G G APPP P
Sbjct: 660 PPPPPP---PPPGGQAGGAPPPPP 680
Score = 23.4 bits (48), Expect(2) = 8.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 474 PKXXPPPPPP 445
P+ PPPPPP
Sbjct: 656 PEAGPPPPPP 665
Score = 23.4 bits (48), Expect(2) = 8.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 462 PPPPPPG 442
PPPPPPG
Sbjct: 663 PPPPPPG 669
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 29.5 bits (63), Expect = 4.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 912 PPPQRGXXPRXGXXGGEPPP 853
PPP G P G GG PPP
Sbjct: 209 PPPMGGPPPMGGPPGGYPPP 228
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 907 PPKGXXPPXGXSXGRAPPPXP 845
PP G PP G G PPP P
Sbjct: 210 PPMGGPPPMGGPPGGYPPPPP 230
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 29.5 bits (63), Expect = 4.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP PP G PPP P
Sbjct: 314 PPPPPPPPPPPPGDGGAPPPPPPP 337
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.5 bits (63), Expect = 4.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP P G PP + G PPP P
Sbjct: 377 PPPPTNGPPPPPPPTNGPPPPPPP 400
Score = 29.5 bits (63), Expect = 4.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP P G PP + G PPP P
Sbjct: 387 PPPPTNGPPPPPPPTNGPPPPPPP 410
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP G PPP P
Sbjct: 371 PPPPPPGRRPPSG-KINPPPPPPP 393
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 28.7 bits (61), Expect = 7.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP G PPP P
Sbjct: 283 PPPPPPGRRPPSG-KINPPPPPPP 305
>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
Length = 678
Score = 25.4 bits (53), Expect(2) = 8.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 474 PKXXPPPPPPG 442
P PPPPPPG
Sbjct: 550 PSEEPPPPPPG 560
Score = 21.4 bits (43), Expect(2) = 8.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 462 PPPPPPGXXE 433
PPPPPP E
Sbjct: 575 PPPPPPEPPE 584
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,146,237
Number of Sequences: 59808
Number of extensions: 172324
Number of successful extensions: 1428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2967383049
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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