Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_P16
(995 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.73
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.73
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.73
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 3.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.9
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.8
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 29 6.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 9.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 9.0
AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical... 25 9.8
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.73
Identities = 22/81 (27%), Positives = 24/81 (29%)
Frame = -3
Query: 918 PXPPPQRGXXPRXGXXGGEPPPXXXXXXXXXXXXXXXXXXXGXXXXSLXPXGGGXPPGGK 739
P PPP +G P G G PPP G P GG PP +
Sbjct: 238 PPPPPPKGSPPLAG-SGSPPPPPAAGSPPPPRTGSPPPPPTGSPP---PPPAGGSPPPPR 293
Query: 738 XXQXXXPPLXGGXPXXXXXXP 676
PP G P P
Sbjct: 294 AGSPPPPPPPRGSPPTGSLPP 314
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP + PPP P
Sbjct: 280 PPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 27.5 bits (58), Expect(2) = 1.6
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = -3
Query: 462 PPPPPPGXXEXXXXXXXXXPRGXXXXLXKKXRPPPPXXQKK 340
PPPPPP G PPPP QK+
Sbjct: 297 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 337
Score = 21.8 bits (44), Expect(2) = 1.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 474 PKXXPPPPPPG 442
P PPPPP G
Sbjct: 276 PTGSPPPPPAG 286
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.73
Identities = 22/81 (27%), Positives = 24/81 (29%)
Frame = -3
Query: 918 PXPPPQRGXXPRXGXXGGEPPPXXXXXXXXXXXXXXXXXXXGXXXXSLXPXGGGXPPGGK 739
P PPP +G P G G PPP G P GG PP +
Sbjct: 259 PPPPPPKGSPPLAG-SGSPPPPPAAGSPPPPRTGSPPPPPTGSPP---PPPAGGSPPPPR 314
Query: 738 XXQXXXPPLXGGXPXXXXXXP 676
PP G P P
Sbjct: 315 AGSPPPPPPPRGSPPTGSLPP 335
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP + PPP P
Sbjct: 301 PPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 27.5 bits (58), Expect(2) = 1.6
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = -3
Query: 462 PPPPPPGXXEXXXXXXXXXPRGXXXXLXKKXRPPPPXXQKK 340
PPPPPP G PPPP QK+
Sbjct: 318 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 358
Score = 21.8 bits (44), Expect(2) = 1.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 474 PKXXPPPPPPG 442
P PPPPP G
Sbjct: 297 PTGSPPPPPAG 307
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.73
Identities = 22/81 (27%), Positives = 24/81 (29%)
Frame = -3
Query: 918 PXPPPQRGXXPRXGXXGGEPPPXXXXXXXXXXXXXXXXXXXGXXXXSLXPXGGGXPPGGK 739
P PPP +G P G G PPP G P GG PP +
Sbjct: 244 PPPPPPKGSPPLAG-SGSPPPPPAAGSPPPPRTGSPPPPPTGSPP---PPPAGGSPPPPR 299
Query: 738 XXQXXXPPLXGGXPXXXXXXP 676
PP G P P
Sbjct: 300 AGSPPPPPPPRGSPPTGSLPP 320
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP + PPP P
Sbjct: 286 PPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 27.5 bits (58), Expect(2) = 1.6
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = -3
Query: 462 PPPPPPGXXEXXXXXXXXXPRGXXXXLXKKXRPPPPXXQKK 340
PPPPPP G PPPP QK+
Sbjct: 303 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 343
Score = 21.8 bits (44), Expect(2) = 1.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 474 PKXXPPPPPPG 442
P PPPPP G
Sbjct: 282 PTGSPPPPPAG 292
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 698 GXPPXRGGXXXCXXFPPGGXPPPXG 772
G PP GG PP G PPP G
Sbjct: 1584 GPPPLMGGPPPRLGMPPPGPPPPNG 1608
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP S G PPP P
Sbjct: 743 PPPPPPGGLPP--ISGGPPPPPPP 764
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP + G PPP P
Sbjct: 727 PPPPPPGGLPP--ITGGPPPPPPP 748
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 462 PPPPPPG 442
PPPPPPG
Sbjct: 772 PPPPPPG 778
Score = 23.0 bits (47), Expect(2) = 9.0
Identities = 12/47 (25%), Positives = 13/47 (27%)
Frame = -3
Query: 585 PPXAPXXXXFFSXXXPPXXXXXXXXXXXXXXXXGVXXPKXXPPPPPP 445
PP P + PP P PPPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP S G PPP P
Sbjct: 743 PPPPPPGGLPP--ISGGPPPPPPP 764
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP + G PPP P
Sbjct: 727 PPPPPPGGLPP--ITGGPPPPPPP 748
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 462 PPPPPPG 442
PPPPPPG
Sbjct: 772 PPPPPPG 778
Score = 23.0 bits (47), Expect(2) = 9.0
Identities = 12/47 (25%), Positives = 13/47 (27%)
Frame = -3
Query: 585 PPXAPXXXXFFSXXXPPXXXXXXXXXXXXXXXXGVXXPKXXPPPPPP 445
PP P + PP P PPPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP S G PPP P
Sbjct: 326 PPPPPPGGLPP--ISGGPPPPPPP 347
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G PP + G PPP P
Sbjct: 310 PPPPPPGGLPP--ITGGPPPPPPP 331
Score = 23.4 bits (48), Expect(2) = 9.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 462 PPPPPPG 442
PPPPPPG
Sbjct: 355 PPPPPPG 361
Score = 23.0 bits (47), Expect(2) = 9.3
Identities = 12/47 (25%), Positives = 13/47 (27%)
Frame = -3
Query: 585 PPXAPXXXXFFSXXXPPXXXXXXXXXXXXXXXXGVXXPKXXPPPPPP 445
PP P + PP P PPPPPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 925 FXXPPXPPKGXXPPXGXSXGRAPPPXP 845
F PP P G PP G PPP P
Sbjct: 73 FIPPPPGPGGIPPPPPMFAGGIPPPPP 99
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP P G PP G PPP P
Sbjct: 96 PPPPMMGGIPPPPPMFGAPPPPPP 119
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2
Query: 913 PXPPKGXXPPXGXSXGRAPPPXP 845
P PP PP G S RAPPP P
Sbjct: 1426 PLPP-ALPPPRGSSVFRAPPPLP 1447
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G P G PPP P
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPP 322
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
PP PP G P G PPP P
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPP 332
>AC084158-11|AAK68558.1| 555|Caenorhabditis elegans Hypothetical
protein Y69A2AR.14 protein.
Length = 555
Score = 25.0 bits (52), Expect(2) = 9.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 474 PKXXPPPPPP 445
PK PPPPPP
Sbjct: 306 PKPPPPPPPP 315
Score = 21.4 bits (43), Expect(2) = 9.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 462 PPPPPPGXXE 433
PPPPPP E
Sbjct: 309 PPPPPPPIHE 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,234,136
Number of Sequences: 27780
Number of extensions: 189975
Number of successful extensions: 1584
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2605097262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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