Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P16
         (995 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    32   0.68 
At4g18570.1 68417.m02749 proline-rich family protein common fami...    30   2.1  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    24   5.3  
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b...    28   8.4  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
           PP PP G  PP     G  PPP P
Sbjct: 681 PPPPPPGGGPPPPPGGGPPPPPPP 704



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 918 PXPPPQRGXXPRXGXXGGEPPP 853
           P PPP  G  P     GG PPP
Sbjct: 680 PPPPPPPGGGPPPPPGGGPPPP 701



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
           PP PP G  PP        PPP P
Sbjct: 682 PPPPPGGGPPPPPGGGPPPPPPPP 705


>At4g18570.1 68417.m02749 proline-rich family protein common family
           members: At3g25690, At4g04980, At5g61090 [Arabidopsis
           thaliana]
          Length = 642

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
           PP PP    PP   S  +APPP P
Sbjct: 315 PPPPPLLQQPPPPPSVSKAPPPPP 338


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 23.8 bits (49), Expect(2) = 5.3
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = -3

Query: 462 PPPPPPGXXEXXXXXXXXXPRGXXXXLXKKXRPPPP 355
           PPPPPP             P      L +   PPPP
Sbjct: 41  PPPPPPPMRRRAPLPPPPPPAMRRRVLPRPPPPPPP 76



 Score = 23.4 bits (48), Expect(2) = 5.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 483 VXXPKXXPPPPPP 445
           V  P   PPPPPP
Sbjct: 21  VPLPPPPPPPPPP 33


>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
           boundaries domain protein 13 (LBD13) identical to LOB
           DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
          Length = 268

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 916 PPXPPKGXXPPXGXSXGRAPPPXP 845
           PP PP    PP   S   APPP P
Sbjct: 195 PPPPPPTPRPPRLLSSQPAPPPTP 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,746,700
Number of Sequences: 28952
Number of extensions: 171156
Number of successful extensions: 1716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2431362000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)