Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P15
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)              66   2e-11
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.5  
SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                28   8.1  

>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
          Length = 168

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 53/132 (40%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
 Frame = +3

Query: 96  SG*VVLVLSGRYAGRKAIVVKXL----RRRYFRQAVRACFRRWYRQVPPGKVHKEDGXRI 263
           SG VVLVL GRYAG+KA+++K        + +  A+ A   R+     P KV K  G + 
Sbjct: 7   SGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARY-----PLKVTKRMGKK- 60

Query: 264 XSTKRSR*AFRERL*TYNHLMPPVIQLTSPL-KNFSAKXPER-PCKR*EAAFXHASRFEE 437
            + KRS+     ++  YNHLMP    +  PL K    K   R P  + +A     S  EE
Sbjct: 61  RTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKKALREVKSTLEE 120

Query: 438 RYKSGKNKWFFR 473
           RYKSGKNKWFF+
Sbjct: 121 RYKSGKNKWFFQ 132



 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 29/48 (60%), Positives = 35/48 (72%)
 Frame = +1

Query: 157 RXYDEGTSDKPYGHAFVAGIDRYPPGKCTKRMGXE*XPQRGPDKPFVK 300
           + YD+G+SDKPYGHA VAG+ RYP  K TKRMG +   +R   KPFVK
Sbjct: 27  KNYDDGSSDKPYGHALVAGVARYPL-KVTKRMGKKRTAKRSKVKPFVK 73


>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 437 LFKTTRVXKRSFLPFAGSFRSFGAEIFQRRSQLYNGWHQVIIGLQPFTKG 288
           LFKT    K+SF PF G +R FG E +     L  G  +   G+ P+  G
Sbjct: 240 LFKTPNYKKQSF-PFYGGYRGFG-EGWNNALYLGPGTRREHYGMDPYGNG 287


>SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 584

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -3

Query: 335 NGWHQVIIGLQPFTKGLSGPLCGXYSXPILFVHFPGGYLSIP-ATKACPYGLSEVP 171
           +G+H V  G      G      G Y  P L++  P GY  +P      P+G   VP
Sbjct: 341 HGYHAVPHGYNEVPHGYHEVAHGYYEVPHLYLAAPHGYHEMPHGYHEVPHGYHAVP 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,142,392
Number of Sequences: 59808
Number of extensions: 315054
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)