Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P15
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...    69   5e-12
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...    69   5e-12
Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical p...    29   3.1  
AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    28   7.1  

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 6/130 (4%)
 Frame = +3

Query: 99  G*VVLVLSGRYAGRKAIVVKX----LRRRYFRQAVRACFRRWYRQVPPGKVHKEDGXRIX 266
           G VVLVL G+YAGRKA+VVK     +  R +  A+ A   R+     P KV K+ G +  
Sbjct: 8   GKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRY-----PLKVTKDMGKKKI 62

Query: 267 STKRSR*AFRERL*TYNHLMPP--VIQLTSPLKNFSAKXPERPCKR*EAAFXHASRFEER 440
             +     F + + +Y HL+P    + +     N + +  + P K+ +A     S+FEER
Sbjct: 63  EKRNKLKPFLKVV-SYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEER 121

Query: 441 YKSGKNKWFF 470
           YK+GKNKWFF
Sbjct: 122 YKTGKNKWFF 131


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 6/130 (4%)
 Frame = +3

Query: 99  G*VVLVLSGRYAGRKAIVVKX----LRRRYFRQAVRACFRRWYRQVPPGKVHKEDGXRIX 266
           G VVLVL G+YAGRKA+VVK     +  R +  A+ A   R+     P KV K+ G +  
Sbjct: 8   GKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRY-----PLKVTKDMGKKKI 62

Query: 267 STKRSR*AFRERL*TYNHLMPP--VIQLTSPLKNFSAKXPERPCKR*EAAFXHASRFEER 440
             +     F + + +Y HL+P    + +     N + +  + P K+ +A     S+FEER
Sbjct: 63  EKRNKLKPFLKVV-SYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEER 121

Query: 441 YKSGKNKWFF 470
           YK+GKNKWFF
Sbjct: 122 YKTGKNKWFF 131


>Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical
           protein F09C6.7 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 307 YNLSRKAYLDLFVXXILXPSSLCTFPGGTCRYQ 209
           ++ ++KAYLD+    ++  S  C F G  C+YQ
Sbjct: 179 FSEAQKAYLDVSTVFLVLGSVYCPFAGLYCKYQ 211


>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 184 CRKYLRRXFLTTIALRPAYRPLKT 113
           C +YL + F  T+A+ P + PL T
Sbjct: 281 CTEYLGKIFTLTVAMYPTFNPLPT 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,870,493
Number of Sequences: 27780
Number of extensions: 229936
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)